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@cobriniklab Cobrinik Laboratory at Children's Hospital Los Angeles

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    13 repositories

    • seuratTools

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • ARMOR

      Public
      Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
      Python
      •
      MIT License
      •35•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • chevreul

      Public
      Processing, plotting, and interactive eda of full-length scRNA-seq as SingleCellExperiments
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • seuFLViz

      Public
      Processing, plotting, and interactive eda of full-length scRNA-seq as seurat objects
      R
      •
      Other
      •2•4•3•0•Updated Jun 15, 2025Jun 15, 2025

    • chevreulPlot

      Public
      Plotting of full-length scRNA-seq as SingleCellExperiments
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 15, 2025Jun 15, 2025

    • chevreulProcess

      Public
      Processing of full-length scRNA-seq as SingleCellExperiments
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • chevreulShiny

      Public
      Interactive exploratory data analysis of full-length scRNA-seq as SingleCellExperiments
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • chevreuldata

      Public
      Retinal scRNA-seq datasets from the Cobrinik lab at CHLA for processing and visualization using Chevreul
      R
      •
      Other
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • shayler_2023_workflow

      Public
      A snakemake workflow to reproduce single cell processing steps used in manuscript from Shayler et al. 2023
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • rb_exome

      Public
      R
      •1•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • gRNA-for-BE-design-repository

      Public
      Python
      •1•0•0•0•Updated May 25, 2022May 25, 2022

    • stchlkExome

      Public
      R
      •1•0•0•0•Updated Aug 17, 2020Aug 17, 2020

    • onh_pipeline

      Public
      R
      •0•0•0•0•Updated Oct 19, 2017Oct 19, 2017