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    • spatiomic

      Public
      A Python package for unsupervised analysis of spatial (prote)omics data.
      Python
      0200Updated Jul 15, 2025Jul 15, 2025
    • A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
      Python
      0800Updated Jun 8, 2025Jun 8, 2025
    • Feature-rich Python implementation of the tximport package for gene count estimation.
      Python
      23600Updated May 28, 2025May 28, 2025
    • pertpy

      Public
      Perturbation Analysis in the scverse ecosystem.
      Python
      32000Updated Apr 7, 2025Apr 7, 2025
    • pasta

      Public
      Pattern Analysis of SpaTial omics datA
      TeX
      3000Updated Mar 13, 2025Mar 13, 2025
    • Python package to perform enrichment analysis from omics data.
      Python
      31000Updated Jan 28, 2025Jan 28, 2025
    • k-DBCV

      Public
      High speed implementation of Density Based Cluster Validation (DBCV)
      Python
      2000Updated Jan 23, 2025Jan 23, 2025
    • easySCFr

      Public
      R
      5100Updated Nov 27, 2024Nov 27, 2024
    • PyDESeq2

      Public
      A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
      Python
      76000Updated Nov 5, 2024Nov 5, 2024
    • Implementation of MULTISPATI-PCA in Python
      Python
      1000Updated Nov 1, 2024Nov 1, 2024
    • Snakemake workflow for bulk RNA sequencing with pytximport.
      Python
      2500Updated Sep 30, 2024Sep 30, 2024
    • xpysom

      Public
      XPySom is a minimalistic implementation of batch Self Organizing Map algorithm
      Python
      439000Updated Sep 20, 2023Sep 20, 2023
    • .github

      Public
      0000Updated Feb 2, 2023Feb 2, 2023