Repositories list

• DispatcherSuite

  Public
  A suite of microservices to interface different messaging systems.

  javamicroserviceskafka+ 5spring-bootjob-schedulerspring-cloudspring-kafkaazure-event-hubs

  Java

  •

  MIT License

  •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

• bioinformatics

  Public
  Tool including several common bioinformatics software applications

  dockerbioinformatics

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jun 29, 2025Jun 29, 2025

• bridge2ai-docs

  Public
  Bridge2AI Voice | Documentation Dashboard

  pythonaistreamlit-dashboard+ 2bridge2aibridge2ai-voice

  Python

  •

  MIT License

  •4•2•0•0•Updated Jun 27, 2025Jun 27, 2025

• voice-data-governance

  Public
  JavaScript

  •1•0•0•0•Updated Jun 26, 2025Jun 26, 2025

• ERVmap

  Public
  ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.

  docker

  Perl

  •

  MIT License

  •14•1•0•0•Updated Jun 25, 2025Jun 25, 2025

• SalmonTE

  Public
  SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •23•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• bridge2ai-redcap

  Public
  Bridge2AI Voice | REDCap

  airedcapbridge2ai+ 1bridge2ai-voice

  MIT License

  •3•8•0•0•Updated Jun 13, 2025Jun 13, 2025

• beacon

  Public archive
  Dockerized GA4GH Beacon

  dockerbeacon

  HTML

  •

  MIT License

  •0•3•0•0•Updated Jun 11, 2025Jun 11, 2025

• STRIDES

  Public
  Supporting the Azure + NIH STRIDES initiative

  C#

  •

  MIT License

  •3•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• stork

  Public archive
  Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization

  dockermachine-learningai+ 5ivfpythondeep-learningtensorflowconvolutional-neural-networks

  Python

  •

  MIT License

  •3•5•0•2•Updated Jun 6, 2025Jun 6, 2025

• .github

  Public
  README for the Englander Institute for Precision Medicine Org Page

  0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• b2ai-peds-protocol

  Public
  1•0•0•0•Updated Aug 23, 2024Aug 23, 2024

• stork-v

  Public archive
  This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behind this project introduced BELA, the Blastocyst Evaluation Learning Algorithm, a novel model for embryo ploidy status prediction.

  dockeraimachine-learning

  Python

  •5•3•0•9•Updated Jun 17, 2024Jun 17, 2024

• hello-mess-nf

  Public
  A Nextflow pipeline to experiment with DSL2 + Zero Mess

  nextflow-pipelinedsl2

  Nextflow

  •

  MIT License

  •1•4•0•0•Updated May 20, 2024May 20, 2024

• rnaseq-messaging

  Public
  RNAseq pipeline to demonstrate use of messaging

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• cnn-smoothie

  Public archive
  Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

  machine-learningaitensorflow+ 5pythondockerdeep-learningcnnconvolutional-neural-networks

  Python

  •

  MIT License

  •1•1•0•5•Updated Oct 3, 2023Oct 3, 2023

• ai-biopsy

  Public archive
  Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging

  dockeraimachine-learning+ 3deep-learningtensorflowconvolutional-neural-networks

  Python

  •

  MIT License

  •10•3•0•5•Updated Oct 3, 2023Oct 3, 2023

• stork-a

  Public archive
  dockermachine-learningai

  R

  •

  MIT License

  •3•0•0•4•Updated Oct 3, 2023Oct 3, 2023

• pmkb-bot

  Public archive
  PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.

  nodejsdockerai+ 13cancerazurebot-frameworkcancer-genomicsknowledgebasecortanaluis+ 6

  JavaScript

  •

  MIT License

  •0•4•2•2•Updated Jun 22, 2022Jun 22, 2022

• bowtie2

  Public archive
  A fast and sensitive gapped read aligner

  C++

  •

  GNU General Public License v3.0

  •166•0•0•0•Updated Sep 20, 2021Sep 20, 2021

• picard

  Public archive
  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Java

  •

  MIT License

  •378•0•0•0•Updated Sep 17, 2021Sep 17, 2021

• hello-nextflow

  Public
  An hello world pipeline to test nextflow installations.

  groovynextflow-pipelines

  Nextflow

  •0•0•0•0•Updated May 26, 2021May 26, 2021

• CIN

  Public
  aiopenslidetensorflow2

  Python

  •

  MIT License

  •6•5•1•0•Updated Jan 15, 2021Jan 15, 2021

• omero-server-docker

  Public
  EIPM fork of OMERO.server production docker image, with OMERO.dropbox support added.

  omero

  Shell

  •28•0•0•0•Updated Nov 20, 2020Nov 20, 2020

• dgvar

  Public
  Screening deleterious germline variants (DGVs) in WCM UC cohort

  germline-variants

  Python

  •2•5•0•0•Updated Aug 10, 2020Aug 10, 2020

• unity-workshop

  Public
  R Lab XR in Healthcare Unity Workshop

  workshopunityvr+ 6oculusvirtual-realityhealthcarespatial-computingoculus-questai-xr-lab

  C#

  •

  MIT License

  •0•2•0•0•Updated Aug 7, 2020Aug 7, 2020

• paper_trail

  Public archive
  Track changes to your models' data. Good for auditing or versioning.

  Ruby

  •

  MIT License

  •907•0•0•0•Updated Aug 18, 2015Aug 18, 2015

• sunspot_autocomplete

  Public archive
  JavaScript

  •

  Other

  •15•0•0•0•Updated Mar 1, 2012Mar 1, 2012