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epidemics
PublicA library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.tutorials-middle
PublicTutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.tutorials
Publiccleanepi
PublicR package to clean and standardize epidemiological datasuperspreading
PublicEstimation of individual-level variation in transmissionepiverse
Publicetdashboard
Publicetstats
Publicepimodelac-en
Publicepimodelac
Publicepitkit
PublicEpiTKit-EN
Publictutorials-late
PublicTutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.research-compendium
Publictutorials-early
PublicTutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.git-rstudio-basics
PublicVersion Control with Git using Rstudioepiverse-trace.github.io
Publicreadepi
PublicAn R package for importing epi data into R.safeframe
Publiclinelist
PublicR package for handling linelist dataepiverselearner
Publicepi-training-kit
Public templateAn e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbeanepiverse_demos
Publicserofoi
PublicEstimates the Force-of-Infection of a given pathogen from population based sero-prevalence studieshowto
Public.github
Publiccfr
PublicR package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-seriesblueprints
PublicSoftware development blueprints for epiverse-traceepisoap
Public[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templatespackagetemplate
Public templateTemplate of an R package with standard Epiverse-TRACE automation