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Publicepidemics
PublicA library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.tutorials-middle
PublicTutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.tutorials
Public- R package to clean and standardize epidemiological data
superspreading
PublicEstimation of individual-level variation in transmissionepiverse
Publicetstats
Publicepitkit
PublicEpiTKit-EN
Publictutorials-late
PublicTutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.research-compendium
Publictutorials-early
PublicTutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.git-rstudio-basics
PublicVersion Control with Git using Rstudioepiverse-trace.github.io
Publicreadepi
PublicAn R package for importing epi data into R.safeframe
Publiclinelist
PublicR package for handling linelist dataepiverselearner
Publicepi-training-kit
Public templateAn e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbeanepiverse_demos
Publicserofoi
PublicEstimates the Force-of-Infection of a given pathogen from population based sero-prevalence studieshowto
Public.github
Publiccfr
PublicR package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-seriesblueprints
PublicSoftware development blueprints for epiverse-traceepisoap
Public[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templatespackagetemplate
Public templateTemplate of an R package with standard Epiverse-TRACE automation