Repositories list

• avillachlab-jenkins-bdc-etl

  Public
  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 12, 2025Jul 12, 2025

• i2b2v2-webclient

  Public
  JavaScript

  •5•2•1•6•Updated Jul 12, 2025Jul 12, 2025

• PIC-SURE-Frontend

  Public
  A frontend for the PIC-SURE API

  TypeScript

  •

  Apache License 2.0

  •0•1•0•8•Updated Jul 11, 2025Jul 11, 2025

• i2b2-webclient-proxy

  Public
  NodeJS-based web hosting and secure proxy server. Loads i2b2v2 web client by default.

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• pic-sure-bdc-release-control

  Public
  Apache License 2.0

  •8•1•0•0•Updated Jul 11, 2025Jul 11, 2025

• hypatio-app

  Public
  Python

  •1•4•0•8•Updated Jul 11, 2025Jul 11, 2025

• udi-chat

  Public
  For experimenting with chat based interface for the Universal Discovery Interface.

  hidivelab

  TypeScript

  •

  MIT License

  •0•0•0•4•Updated Jul 10, 2025Jul 10, 2025

• pic-sure-metadata-curation

  Public
  Parse and generate variable-level data to be exposed through the search interface.

  SAS

  •

  Apache License 2.0

  •2•2•0•0•Updated Jul 10, 2025Jul 10, 2025

• pic-sure-hpds

  Public
  Java

  •

  Apache License 2.0

  •6•3•0•2•Updated Jul 9, 2025Jul 9, 2025

• pic-sure-baseline-release-control

  Public
  5•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• picsure-dictionary

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated Jul 8, 2025Jul 8, 2025

• PICTURE

  Public
  Pathology Imaging Characterization with Uncertainty-aware Rapid Evaluation (PICTURE)

  Jupyter Notebook

  •2•1•0•2•Updated Jul 8, 2025Jul 8, 2025

• pic-sure-gic-common-frontend

  Public
  Java

  •

  Apache License 2.0

  •3•0•0•11•Updated Jul 8, 2025Jul 8, 2025

• picsure-dictionary-etl

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•1•Updated Jul 8, 2025Jul 8, 2025

• pic-sure-gic-common-release-control

  Public
  1•0•0•0•Updated Jul 7, 2025Jul 7, 2025

• dbmi-fileservice

  Public
  Python

  •0•2•0•4•Updated Jul 7, 2025Jul 7, 2025

• fhirquestionnaire

  Public
  HTML

  •0•2•0•4•Updated Jul 7, 2025Jul 7, 2025

• dbmisvc-starter

  Public
  Python

  •0•1•0•3•Updated Jul 7, 2025Jul 7, 2025

• Access-to-Data-using-PIC-SURE-API

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •8•7•0•1•Updated Jul 3, 2025Jul 3, 2025

• cellpop

  Public
  hidivelab

  Jupyter Notebook

  •

  MIT License

  •1•0•13•4•Updated Jul 2, 2025Jul 2, 2025

• gehlenborglab-website

  Public
  Code for HIDIVE Lab website.

  websitehidivelab

  TypeScript

  •

  MIT License

  •41•10•9•1•Updated Jul 1, 2025Jul 1, 2025

• viv

  Public
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  imagingome-tiffopenmicroscopy+ 4zarrvivhubmaphidivelab

  JavaScript

  •

  MIT License

  •50•313•50•13•Updated Jul 1, 2025Jul 1, 2025

• vizarr

  Public
  A minimal Zarr image viewer based on Viv.

  jupyter-notebookszarrviv+ 1hidivelab

  TypeScript

  •

  MIT License

  •24•157•22•11•Updated Jul 1, 2025Jul 1, 2025

• UDIAgent

  Public
  UDIAgent: Inference for generating visualizations from natural language prompts

  hidivelab

  Python

  •

  MIT License

  •72•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• pic-sure-all-in-one

  Public
  Shell

  •

  Apache License 2.0

  •12•4•0•0•Updated Jun 30, 2025Jun 30, 2025

• music-ecrf-harmonization

  Public
  R

  •

  Apache License 2.0

  •0•3•0•0•Updated Jun 27, 2025Jun 27, 2025

• chromoscope

  Public
  Interactive multiscale visualization for structural variation in human genomes

  hidivelab

  TypeScript

  •

  MIT License

  •7•70•35•2•Updated Jun 26, 2025Jun 26, 2025

• avillachlab-jenkins

  Public
  HCL

  •

  Apache License 2.0

  •6•5•0•0•Updated Jun 25, 2025Jun 25, 2025

• pic-sure

  Public
  PIC-SURE API

  Java

  •

  Apache License 2.0

  •3•6•0•6•Updated Jun 25, 2025Jun 25, 2025

• halyos

  Public
  Redesigning the Patient Portal Experience with SMART on FHIR.

  visualizationfhirehr+ 4smart-on-fhirfhir-clienthalyoshidivelab

  JavaScript

  •

  MIT License

  •8•23•1•1•Updated Jun 24, 2025Jun 24, 2025