Harvard Medical School - Department of Biomedical Informatics

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381 repositories

avillachlab-jenkins-bdc-etl
Public
Shell
•
Apache License 2.0
•0•0•0•0•Updated Aug 3, 2025Aug 3, 2025
Access-to-Data-using-PIC-SURE-API
Public
Jupyter Notebook
•
Apache License 2.0
•8•7•0•0•Updated Aug 3, 2025Aug 3, 2025
picsure-dictionary
Public
Java
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Apache License 2.0
•1•0•0•0•Updated Aug 3, 2025Aug 3, 2025
i2b2v2-webclient
Public
JavaScript
•5•2•1•2•Updated Aug 1, 2025Aug 1, 2025
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
hidivelab
TypeScript
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MIT License
•7•70•35•3•Updated Aug 1, 2025Aug 1, 2025
pic-sure-hpds
Public
Java
•
Apache License 2.0
•6•3•0•3•Updated Aug 1, 2025Aug 1, 2025
uchimata
Public
Library for visualizing three-dimensional genome models and associated genomics data
hidivelab
TypeScript
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MIT License
•0•2•6•3•Updated Aug 1, 2025Aug 1, 2025
cellpop
Public
hidivelab
Jupyter Notebook
•
MIT License
•1•0•13•4•Updated Aug 1, 2025Aug 1, 2025
udi-grammar
Public
The Universal Discovery Interface Grammar.
hidivelab
TypeScript
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MIT License
•2•4•0•5•Updated Aug 1, 2025Aug 1, 2025
udi-grammar-py
Public
Python code for generating udi-grammar specifications.
hidivelab
Python
•
MIT License
•1•0•0•0•Updated Aug 1, 2025Aug 1, 2025
gehlenborglab-website
Public
Code for HIDIVE Lab website.
website hidivelab
TypeScript
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MIT License
•41•10•9•3•Updated Aug 1, 2025Aug 1, 2025
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
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Apache License 2.0
•0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
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Apache License 2.0
•0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
•
Apache License 2.0
•0•1•0•10•Updated Aug 1, 2025Aug 1, 2025
pic-sure-gic-institution-release-control
Public
Apache License 2.0
•0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy zarr viv hubmap hidivelab
JavaScript
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MIT License
•50•314•51•13•Updated Aug 1, 2025Aug 1, 2025
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks zarr viv hidivelab
TypeScript
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MIT License
•26•158•23•12•Updated Aug 1, 2025Aug 1, 2025
avillachlab-jenkins
Public
HCL
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Apache License 2.0
•6•5•0•0•Updated Jul 31, 2025Jul 31, 2025
pic-sure-search-prototype
Public archive
Java
•
Apache License 2.0
•1•0•0•0•Updated Jul 31, 2025Jul 31, 2025
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Jul 31, 2025Jul 31, 2025
pic-sure-gic-common-frontend
Public
Java
•
Apache License 2.0
•3•0•0•11•Updated Jul 31, 2025Jul 31, 2025
pgab
Public
Pediatric Growth Assessment Benchmark
Apache License 2.0
•0•0•0•0•Updated Jul 31, 2025Jul 31, 2025
i2b2-webclient-proxy
Public
NodeJS-based web hosting and secure proxy server. Loads i2b2v2 web client by default.
HTML
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MIT License
•0•0•0•0•Updated Jul 31, 2025Jul 31, 2025
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
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Apache License 2.0
•0•1•0•2•Updated Jul 31, 2025Jul 31, 2025
pic-sure-metadata-curation
Public
Parse and generate variable-level data to be exposed through the search interface.
SAS
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Apache License 2.0
•2•2•0•0•Updated Jul 30, 2025Jul 30, 2025
pic-sure-all-in-one
Public
Shell
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Apache License 2.0
•12•4•0•0•Updated Jul 30, 2025Jul 30, 2025
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Jul 29, 2025Jul 29, 2025
pic-sure-chatbot
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Jul 29, 2025Jul 29, 2025
pic-sure-auth-microapp
Public
Java
•
Apache License 2.0
•5•4•0•2•Updated Jul 28, 2025Jul 28, 2025
uchimata-py
Public
uchimata but as a notebook widget
hidivelab
Jupyter Notebook
•0•1•2•0•Updated Jul 28, 2025Jul 28, 2025