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    13 repositories

    • PPanGGOLiN

      Public
      Build a partitioned pangenome graph from microbial genomes
      bioinformaticsmicrobial-genomicsmicrobiologycomparative-genomicsbacteriapangenome
      Python
      •
      Other
      •31•271•9•0•Updated Jul 7, 2025Jul 7, 2025

    • netsyn

      Public
      NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.
      Python
      •
      Other
      •2•7•0•0•Updated Apr 25, 2025Apr 25, 2025

    • ASMC

      Public
      ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.
      Python
      •
      Other
      •1•5•0•0•Updated Apr 3, 2025Apr 3, 2025

    • PanGBank-test-datasets

      Public
      Test data to be used for automated testing with the pangbank pipeline.
      0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • metacoco

      Public
      METAbolism COmpletion for microbial COmmunities
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • microscope-user-doc

      Public
      MicroScope Platform User Documentation
      microscope-platform
      6•3•0•0•Updated Jan 8, 2025Jan 8, 2025

    • CAESAR

      Public
      Python
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • asmc_2016

      Public
      ASMC code from de Melo-Minardi et al. (2010) [doi: 10.1093/bioinformatics/btq595], updated in 2016.
      Shell
      •
      Other
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.5k•0•0•0•Updated Feb 13, 2023Feb 13, 2023

    • phigaro

      Public
      Phigaro is a scalable command-line tool for predicting phages and prophages
      HTML
      •
      MIT License
      •15•0•0•0•Updated Apr 28, 2022Apr 28, 2022

    • PlaScope

      Public
      🔬 ⭕ Plasmid exploration of bacterial genomes
      Roff
      •
      GNU General Public License v3.0
      •4•18•3•1•Updated Mar 2, 2022Mar 2, 2022

    • pangenomeNEM

      Public
      bioinformaticsmicrobiologycomparative-genomics
      C
      •
      Other
      •0•4•6•1•Updated Dec 17, 2021Dec 17, 2021

    • tenacity

      Public
      Retrying library for Python
      Python
      •
      Apache License 2.0
      •298•1•0•0•Updated Mar 18, 2021Mar 18, 2021