LINC: Large-scale Imaging of Neural Circuits

All

33 repositories

linc-upptime
Public
Status for all LINC services
Markdown
•
MIT License
•1•0•0•0•Updated Dec 17, 2025Dec 17, 2025
linc-convert
Public
Data conversion scripts for the LINC project
Python
•
Apache License 2.0
•3•1•24•5•Updated Dec 16, 2025Dec 16, 2025
trk_to_annotation
Public
python script to convert trk files to precomputed annoation directory
Python
•
Apache License 2.0
•0•0•0•1•Updated Dec 10, 2025Dec 10, 2025
linc-gallery
Public
LINC Gallery
MDX
•1•0•1•1•Updated Dec 9, 2025Dec 9, 2025
linc-dashboard
Public
LINC Dashboard
Python
•
Apache License 2.0
•1•0•3•0•Updated Dec 1, 2025Dec 1, 2025
linc-docs
Public
LINC Documentation
5•1•7•1•Updated Nov 19, 2025Nov 19, 2025
fiber-bundle-segmentation
Public
Code for the paper "Fully Automated Segmentation of Fiber Bundles in Anatomic Tracing Data"
Python
•
MIT License
•2•1•0•0•Updated Oct 9, 2025Oct 9, 2025
linc-archive
Public
LINC API server and Web app
Python
•17•0•11•0•Updated Jul 25, 2025Jul 25, 2025
sandbox-dandi-archive
Public archive
DANDI API server and Web app
Python
•17•0•0•0•Updated Jul 23, 2025Jul 23, 2025
neuroglancer
Public
WebGL-based viewer for volumetric data
TypeScript
•
Apache License 2.0
•336•1•1•8•Updated Jun 3, 2025Jun 3, 2025
linc-archive-infrastructure
Public
LINC Archive Infrastructure
HCL
•
Apache License 2.0
•8•0•0•1•Updated May 27, 2025May 27, 2025
webknossos
Public
Visualize, share and annotate your large 3D images online
TypeScript
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GNU Affero General Public License v3.0
•30•0•3•3•Updated May 3, 2025May 3, 2025
Fibers.jl
Public
Julia package for reconstructing fiber trajectories from multi-scale, multi-modal imaging data
Julia
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BSD 3-Clause "New" or "Revised" License
•4•19•2•1•Updated Apr 24, 2025Apr 24, 2025
niivue
Public
a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.
TypeScript
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BSD 2-Clause "Simplified" License
•99•0•0•1•Updated Apr 24, 2025Apr 24, 2025
irontract-challenge
Public
https://irontract.mgh.harvard.edu
Python
•3•1•1•0•Updated Apr 2, 2025Apr 2, 2025
handbook
Public archive
Handbook for interacting with the DANDI archive.
HTML
•18•0•0•0•Updated Feb 19, 2025Feb 19, 2025
linc-cloud
Public
Capture issues related to the LINC cloud infrastructure
1•0•6•0•Updated Feb 6, 2025Feb 6, 2025
neuroglancer-temp-fork
Public
WebGL-based viewer for volumetric data
TypeScript
•
Apache License 2.0
•336•0•0•0•Updated Jan 27, 2025Jan 27, 2025
linc-zarr-testing
Public
MIT License
•1•0•0•2•Updated Dec 19, 2024Dec 19, 2024
linc-cli
Public archive
LINC Client to facilitate common operations
Python
•
Apache License 2.0
•33•0•0•0•Updated Nov 19, 2024Nov 19, 2024
dandi-cli
Public archive
DANDI command line client to facilitate common operations
Python
•
Apache License 2.0
•33•0•0•0•Updated Nov 15, 2024Nov 15, 2024
sandbox-dandi-infrastructure
Public archive
Sandbox DANDI infrastructure repository
HCL
•
Apache License 2.0
•8•0•0•0•Updated Nov 5, 2024Nov 5, 2024
lumin
Public
Jupyter Notebook
•0•0•2•0•Updated Aug 9, 2024Aug 9, 2024
linc-interview
Public
Coding exercise for LINC interviews
Python
•
MIT License
•5•0•0•1•Updated Jul 1, 2024Jul 1, 2024
linc-hub
Public archive
Infrastructure and code for the dandihub
Jinja
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Other
•25•0•0•0•Updated Jun 10, 2024Jun 10, 2024
NeuroTrALE-ui
Public archive
WebGL-based viewer for volumetric data
TypeScript
•
Apache License 2.0
•336•1•0•0•Updated May 29, 2024May 29, 2024
linc-pipelines
Public
Top-level image processing streams for LINC data
Shell
•
Apache License 2.0
•3•0•3•1•Updated May 8, 2024May 8, 2024
dandi-infrastructure-abstraction
Public archive
A repository to collect docs/issues on DANDI project infrastructure
HCL
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Apache License 2.0
•8•0•0•0•Updated Mar 25, 2024Mar 25, 2024
dandi-schema
Public archive
Schemata for DANDI archive project
Python
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Apache License 2.0
•15•0•0•0•Updated Mar 14, 2024Mar 14, 2024
synthmorph-torch
Public
Reimplementation of SynthMorph in PyTorch
Python
•
MIT License
•1•0•0•0•Updated Feb 7, 2024Feb 7, 2024