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@medbioinf Medical Bioinformatics

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    15 repositories

    • pipeline-of-identification

      Public
      Nextflow
      •0•0•1•1•Updated Jul 22, 2025Jul 22, 2025

    • xcorrrs

      Public
      Standalone Rust implementation of Comet's XCorr
      Rust
      •
      Other
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • muir

      Public
      Containers for the Medical Bioinformatics
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • pia

      Public
      📚 🔬 PIA - Protein Inference Algorithms
      search-engineinferenceproteinproteomicsprotein-inferencespectrum-identification
      Java
      •
      Other
      •9•24•10•0•Updated Jul 9, 2025Jul 9, 2025

    • maccoys

      Public
      Rust
      •
      Other
      •0•0•1•0•Updated May 26, 2025May 26, 2025

    • macpepdb

      Public
      3rd generation of MaCPepDB reimplemented using Rust and based on ScyllaDB
      Rust
      •
      Other
      •0•1•1•0•Updated May 23, 2025May 23, 2025

    • loop-rs

      Public
      Local Outlier Probabilities (LoOP) implementation in Rust
      Rust
      •
      Other
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • timsrust

      Public
      Rust
      •
      Apache License 2.0
      •12•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • xcorr-reimplementation

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Dec 30, 2024Dec 30, 2024

    • maccoys-exchange-entities

      Public
      Entities for exchanging MaCcoyS results between web API and a client.
      Rust
      •
      Other
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • maccoys-frontend

      Public
      Web based frontend for submitting MaCcoyS searches and browsing results
      Rust
      •
      Other
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • MHC2-prediction-workflows

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • wf-nfcore-rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •784•0•0•0•Updated Feb 16, 2024Feb 16, 2024

    • macpepdb-frontend-nuxt

      Public
      Frontend for MaCPepDB API
      Vue
      •0•1•0•0•Updated Oct 18, 2023Oct 18, 2023

    • pia-knime-nodes

      Public
      This repository holds the declaration for KNIME nodes to use PIA
      workflowknimeproteinpiaknime-node
      Java
      •5•0•1•0•Updated Jul 11, 2023Jul 11, 2023