Repositories list

• RUCova

  Public
  R package to remove unwanted covariance from mass cytometry data

  rcytof

  R

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Jan 7, 2025Jan 7, 2025

• subcellular-SLAM

  Public
  Snakemkae-based workflow that analyzes SLAM-seq data and models subcellular mRNA dynamics

  C++

  •

  MIT License

  •1•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• 3-Quant-seq-FWD-analysis

  Public
  Snakemake workflow for 3' Quant-seq FWD UMI data that aligns reads, deduplicates reads based on UMI, counts them and outputs a single count matrix containing count data of all demultiplexed samples.

  Python

  •1•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• sccrc_slamvelocity

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Feb 8, 2021Feb 8, 2021

• STASNet

  Public
  R

  •

  GNU General Public License v3.0

  •0•5•0•0•Updated Nov 25, 2020Nov 25, 2020

• sccrc

  Public
  HTML

  •0•2•0•0•Updated Jul 6, 2020Jul 6, 2020

• speed2

  Public
  SPEED2:Inferring upstream pathway activity from differential gene expression

  HTML

  •4•6•0•0•Updated Apr 26, 2020Apr 26, 2020