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@morphic-bio Molecular Phenotypes of Null Alleles in Cells (MorPhiC)

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    17 repositories

    • exchange-experiment-analysis

      Public
      Codes and results for exchange experiment analysis
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • STAR

      Public
      Fork of STAR for use with flex
      C++
      •
      MIT License
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • MorPhiC_bulk_RNAseq

      Public
      workflows for JAX bulk RNAseq data analysis
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • call_features

      Public
      From assigned feature barcodes call_features identifies cells with a clearly dominant feature and calls it
      C
      •
      MIT License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • atac-seq

      Public
      Shell
      •
      MIT License
      •0•1•0•0•Updated Oct 10, 2025Oct 10, 2025

    • process_features

      Public
      C
      •
      MIT License
      •0•0•0•0•Updated Oct 5, 2025Oct 5, 2025

    • scRNA-seq

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 20, 2025Sep 20, 2025

    • chromap

      Public
      Fork of chromap with fixes for parallel SAM generation and memory spillover
      C++
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

    • MSK_KO_village_analysis

      Public
      Analysis and results of MSK KO village data
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • Metabolomics

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • MSK_KO_village_cell_typing

      Public
      annotate cell types for MSK KO village data
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • Bulk-RNA-seq

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated May 26, 2025May 26, 2025

    • metadata-schema

      Public
      Repository to hold the MorPhiC metadata schema
      Python
      •1•2•5•0•Updated May 14, 2025May 14, 2025

    • gRNA-Enrichment

      Public
      Python
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • Rshiny-gene-list-app

      Public
      An RShiny application for browsing the current working MorPhiC gene list along with meta data and visualisations.
      R
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • morphic-bio.github.io

      Public
      Basic repository with documentation, useful information and links related to the MorPHiC project
      JavaScript
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated May 1, 2024May 1, 2024

    • morphic-documentation

      Public
      Documentation related to the MorPhic project
      Apache License 2.0
      •0•0•0•0•Updated Jul 4, 2023Jul 4, 2023