Repositories list

• datashuttle

  Public

  neuroinformatics-unit/datashuttle’s past year of commit activity
  Tool for the creation, validation and transfer of neuroscience project folders.

  neurosciencedata-managementneuroblueprint

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •27•29•57•7•Updated Nov 28, 2025Nov 28, 2025

• movement

  Public

  neuroinformatics-unit/movement’s past year of commit activity
  A Python toolbox for analysing animal body movements across space and time

  behaviorkinematicsneuroscience+ 4behaviouranimalmotion-trackingethology

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •75•212•111•29•Updated Nov 28, 2025Nov 28, 2025

• neuroinformatics-unit.github.io

  Public
  Home website of the Neuroinformatics Unit

  BSD 3-Clause "New" or "Revised" License

  •4•12•7•2•Updated Nov 28, 2025Nov 28, 2025

• ethology

  Public

  neuroinformatics-unit/ethology’s past year of commit activity
  Mix-and-match computer vision tools for your animal behaviour analysis

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •19•20•27•16•Updated Nov 27, 2025Nov 27, 2025

• fancylog

  Public
  Fancier logging with python.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •9•14•11•1•Updated Nov 27, 2025Nov 27, 2025

• HowTo

  Public
  NIU website on common software problems and their troubleshooting

  Creative Commons Attribution 4.0 International

  •1•10•13•1•Updated Nov 25, 2025Nov 25, 2025

• photon-mosaic

  Public
  Automated and reproducible analysis of multiphoton imaging datasets

  neurosciencecalcium-imagingneuroscience-methods+ 1calcium-imaging-analysis

  Python

  •

  GNU General Public License v3.0

  •2•11•22•6•Updated Nov 25, 2025Nov 25, 2025

• dashboard

  Public

  neuroinformatics-unit/dashboard’s past year of commit activity
  Overview of all Neuroinformatics Unit repos

  TypeScript

  •

  MIT License

  •36•2•1•8•Updated Nov 24, 2025Nov 24, 2025

• spikewrap

  Public
  A package to manage electrophysiology analysis.

  electrophysiologyneuropixelsextracellular-electrophysiology

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •15•23•21•5•Updated Nov 24, 2025Nov 24, 2025

• slides-movement-cbias2025

  Public
  Slides about `movement`, presented at CBIAS 2025

  TeX

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Nov 23, 2025Nov 23, 2025

• actions

  Public
  Re-usable GitHub Action scripts

  MIT License

  •4•13•8•1•Updated Nov 21, 2025Nov 21, 2025

• poseinterface

  Public
  Run pose estimation across frameworks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Nov 19, 2025Nov 19, 2025

• beekeeping

  Public
  Managing video metadata for animal behaviour experiments

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•0•Updated Nov 18, 2025Nov 18, 2025

• scripts

  Public
  Small but useful scripts to share

  Python

  •0•7•0•1•Updated Nov 17, 2025Nov 17, 2025

• course-animals-in-motion

  Public
  A handbook about open-source tools for tracking animals in videos and quantifying behaviour.

  pythonbehaviortracking+ 5motionhandbookanimalsmovementquarto

  TeX

  •

  Creative Commons Attribution 4.0 International

  •0•5•6•0•Updated Nov 13, 2025Nov 13, 2025

• course-extracellular-ephys-analysis

  Public
  Covering how to build electrophysiology pipelines with SpikeInterface

  Python

  •

  MIT License

  •0•5•1•0•Updated Nov 4, 2025Nov 4, 2025

• python-cookiecutter

  Public
  Utility to create a basic Python project structure with tests, CI etc.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•34•12•0•Updated Nov 3, 2025Nov 3, 2025

• slurmio

  Public
  Python tools to read SLURM job parameters.

  Python

  •

  MIT License

  •1•8•0•0•Updated Nov 3, 2025Nov 3, 2025

• swc-slack

  Public
  Tools to interface with slack

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•8•0•0•Updated Nov 3, 2025Nov 3, 2025

• qt-niu

  Public
  Reusable Qt elements

  Python

  •

  MIT License

  •0•4•0•0•Updated Nov 3, 2025Nov 3, 2025

• derotation

  Public
  Derotate images acquired via multiphoton calcium imaging

  neurosciencecalcium-imagingneuroscience-methods

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•8•5•1•Updated Nov 1, 2025Nov 1, 2025

• software-skills

  Public
  Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

  Creative Commons Attribution 4.0 International

  •0•8•0•0•Updated Oct 30, 2025Oct 30, 2025

• smart-kages-movement

  Public
  Using the movement package to analysing mouse home cage monitoring data acquired in Smart-Kages and tracked with DeepLabCut.

  trackingmousebehaviour+ 1movement

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•1•0•Updated Oct 30, 2025Oct 30, 2025

• slides-movement-governance

  Public
  The emerging governance structure of the movement project.

  TeX

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•0•0•Updated Oct 24, 2025Oct 24, 2025

• quarto-presentation-template

  Public template
  TeX

  •

  BSD 3-Clause "New" or "Revised" License

  •1•11•2•0•Updated Oct 21, 2025Oct 21, 2025

• slides-histology-project-overview

  Public
  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Oct 15, 2025Oct 15, 2025

• slides-behavioural-projects-overview

  Public
  Slides giving an overview of NIU's behavioural analysis projects.

  TeX

  •

  BSD 3-Clause "New" or "Revised" License

  •0•7•0•0•Updated Oct 14, 2025Oct 14, 2025

• .github

  Public
  MIT License

  •1•6•0•0•Updated Oct 10, 2025Oct 10, 2025

• course-behavioural-analysis

  Public archive
  Materials and slides for the video-based analysis of animal behaviour course.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•5•0•0•Updated Oct 9, 2025Oct 9, 2025

• course-behaviour-hpc

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•6•3•0•Updated Oct 8, 2025Oct 8, 2025