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    64 repositories

    • totalspineseg

      Public
      Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.
      mrisegmentationspinespinal-cordsegmentation-modelsnnu-net3d-medical-imagesvertebraevertebrae-segmentationvertebrae-identification
      Python
      •
      GNU Lesser General Public License v3.0
      •4•70•15•3•Updated Sep 15, 2025Sep 15, 2025

    • intranet.neuro.polymtl.ca

      Public
      NeuroPoly's lab manual
      websitedocumentationdeep-learningwikihardwareneuroscienceaccountssphinx-doc
      HTML
      •8•6•46•2•Updated Sep 11, 2025Sep 11, 2025

    • Flux-SynthSeg-Evaluation

      Public
      Host for interactive figures of a poster presented at the 2025 Flux Conference
      HTML
      •0•0•0•0•Updated Sep 6, 2025Sep 6, 2025

    • neuro.polymtl.ca

      Public
      NeuroPoly's Website
      websitedocumentationsphinxneuroscience
      Python
      •7•3•26•3•Updated Sep 5, 2025Sep 5, 2025

    • slicercart

      Public
      Python
      •
      MIT License
      •2•6•89•3•Updated Aug 8, 2025Aug 8, 2025

    • BMPD

      Public
      0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • bibeasy

      Public
      Set of tools to manage academic bibliography
      Python
      •
      Apache License 2.0
      •0•2•17•1•Updated Jun 27, 2025Jun 27, 2025

    • ansible-lint

      Public
      ansible-lint checks playbooks for practices and behavior that could potentially be improved and can fix some of the most common ones for you
      Python
      •
      GNU General Public License v3.0
      •701•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • modular_optuna_ml

      Public
      Modular framework for automating large-scale permutations of Optuna ML studies
      Python
      •0•3•17•4•Updated Jun 3, 2025Jun 3, 2025

    • gitea

      Public
      https://gitea.io fork with https://git-annex.branchable.com support
      Go
      •
      MIT License
      •6k•3•22•8•Updated Jun 2, 2025Jun 2, 2025

    • sct_timings

      Public
      Repository for automated, standardized time measurements of SCT scripts.
      Python
      •1•0•0•0•Updated May 22, 2025May 22, 2025

    • infant-longitudinal-registration

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • Susceptibility-Separation-Phantom

      Public
      This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.
      MATLAB
      •
      MIT License
      •1•9•2•0•Updated Mar 24, 2025Mar 24, 2025

    • distriploy

      Public
      Release & deployment helper
      Python
      •
      MIT License
      •0•2•5•1•Updated Jan 9, 2025Jan 9, 2025

    • coil-qa

      Public
      Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.
      Python
      •
      MIT License
      •0•1•4•0•Updated Nov 28, 2024Nov 28, 2024

    • cortical-surface64mT

      Public
      Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • segmentation-tools-awesome-list

      Public
      This awesome list refers to different 3D Slicer modules and other open source platforms/softwares/solutions availables for manual segmentation and classification workflows.
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • template

      Public
      A framework for creating unbiased MRI templates of the spinal cord
      Python
      •
      MIT License
      •4•5•17•0•Updated Oct 22, 2024Oct 22, 2024

    • phantom-spinoza

      Public
      CAD model and recipe for MRI head-torso phantom fabrication
      MIT License
      •1•2•4•0•Updated Sep 23, 2024Sep 23, 2024

    • changelog

      Public
      Create a changelog file from all the merged pull requests
      Python
      •
      MIT License
      •2•1•5•3•Updated Aug 22, 2024Aug 22, 2024

    • single_voxel_mrs_b0_shimming

      Public
      This repo includes a jupyter notebook to analyze and compare MRS spectra acquired using different B0 shim optimization approaches
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • pediatric-DL-registration

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jul 1, 2024Jul 1, 2024

    • pediatric-intra-inter-encoding

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

    • paradim-segmentation-brain

      Public
      Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM
      Python
      •
      MIT License
      •0•2•4•0•Updated Feb 24, 2024Feb 24, 2024

    • coda

      Public archive
      Deployment and testing repository for https://www.coda-platform.com/
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 5, 2023Sep 5, 2023

    • coil-spine7t

      Public
      Material for the 8Tx/20Rx 7T c-spine coil
      MIT License
      •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023

    • idea-projects

      Public
      Ideas for cool projects
      0•1•42•0•Updated May 17, 2023May 17, 2023

    • bids-hook

      Public
      Tiny CI server to run bids-validator using Gitea webhooks
      Go
      •
      GNU Affero General Public License v3.0
      •0•0•5•2•Updated May 8, 2023May 8, 2023

    • ansible

      Public
      Ansible roles published to https://galaxy.ansible.com/
      MIT License
      •0•0•0•0•Updated Mar 28, 2023Mar 28, 2023

    • data-management

      Public
      Repo that deals with datalad aspects for internal use
      Python
      •0•4•133•2•Updated Feb 28, 2023Feb 28, 2023