Repositories list

• totalspineseg

  Public
  Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

  mrisegmentationspine+ 8spinal-cordsegmentation-modelsnnu-net3d-medical-imagesvertebraevertebrae-segmentationvertebrae-identification+ 1

  Python

  •

  GNU Lesser General Public License v3.0

  •4•74•15•3•Updated Oct 17, 2025Oct 17, 2025

• neuro.polymtl.ca

  Public
  NeuroPoly's Website

  websitedocumentationsphinx+ 1neuroscience

  Python

  •7•3•26•3•Updated Oct 13, 2025Oct 13, 2025

• intranet.neuro.polymtl.ca

  Public
  NeuroPoly's lab manual

  websitedocumentationdeep-learning+ 5wikihardwareneuroscienceaccountssphinx-doc

  HTML

  •8•6•48•2•Updated Oct 10, 2025Oct 10, 2025

• AugLab

  Public
  This repository investigates the influence of different data augmentation strategies on MRI training performance.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Oct 8, 2025Oct 8, 2025

• modular_optuna_ml

  Public
  Modular framework for automating large-scale permutations of Optuna ML studies

  Python

  •0•3•17•4•Updated Oct 7, 2025Oct 7, 2025

• synthetic-pediatric

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• Flux-SynthSeg-Evaluation

  Public
  Host for interactive figures of a poster presented at the 2025 Flux Conference

  HTML

  •0•0•0•0•Updated Sep 6, 2025Sep 6, 2025

• slicercart

  Public
  Python

  •

  MIT License

  •2•6•89•3•Updated Aug 8, 2025Aug 8, 2025

• BMPD

  Public
  0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• bibeasy

  Public
  Set of tools to manage academic bibliography

  Python

  •

  Apache License 2.0

  •0•2•17•1•Updated Jun 27, 2025Jun 27, 2025

• ansible-lint

  Public
  ansible-lint checks playbooks for practices and behavior that could potentially be improved and can fix some of the most common ones for you

  Python

  •

  GNU General Public License v3.0

  •705•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• gitea

  Public
  https://gitea.io fork with https://git-annex.branchable.com support

  Go

  •

  MIT License

  •6.2k•3•22•8•Updated Jun 2, 2025Jun 2, 2025

• sct_timings

  Public
  Repository for automated, standardized time measurements of SCT scripts.

  Python

  •1•0•0•0•Updated May 22, 2025May 22, 2025

• infant-longitudinal-registration

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• Susceptibility-Separation-Phantom

  Public
  This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

  MATLAB

  •

  MIT License

  •1•9•2•0•Updated Mar 24, 2025Mar 24, 2025

• distriploy

  Public
  Release & deployment helper

  Python

  •

  MIT License

  •0•2•5•1•Updated Jan 9, 2025Jan 9, 2025

• coil-qa

  Public
  Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

  Python

  •

  MIT License

  •0•1•4•0•Updated Nov 28, 2024Nov 28, 2024

• cortical-surface64mT

  Public
  Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• segmentation-tools-awesome-list

  Public
  This awesome list refers to different 3D Slicer modules and other open source platforms/softwares/solutions availables for manual segmentation and classification workflows.

  MIT License

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• template

  Public
  A framework for creating unbiased MRI templates of the spinal cord

  Python

  •

  MIT License

  •4•5•17•0•Updated Oct 22, 2024Oct 22, 2024

• phantom-spinoza

  Public
  CAD model and recipe for MRI head-torso phantom fabrication

  MIT License

  •1•2•4•0•Updated Sep 23, 2024Sep 23, 2024

• changelog

  Public
  Create a changelog file from all the merged pull requests

  Python

  •

  MIT License

  •2•1•5•3•Updated Aug 22, 2024Aug 22, 2024

• single_voxel_mrs_b0_shimming

  Public
  This repo includes a jupyter notebook to analyze and compare MRS spectra acquired using different B0 shim optimization approaches

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• pediatric-DL-registration

  Public
  HTML

  •

  MIT License

  •0•1•0•0•Updated Jul 1, 2024Jul 1, 2024

• pediatric-intra-inter-encoding

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• paradim-segmentation-brain

  Public
  Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM

  Python

  •

  MIT License

  •0•2•4•0•Updated Feb 24, 2024Feb 24, 2024

• coda

  Public archive
  Deployment and testing repository for https://www.coda-platform.com/

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 5, 2023Sep 5, 2023

• coil-spine7t

  Public
  Material for the 8Tx/20Rx 7T c-spine coil

  MIT License

  •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023

• idea-projects

  Public
  Ideas for cool projects

  0•2•44•0•Updated May 17, 2023May 17, 2023

• bids-hook

  Public
  Tiny CI server to run bids-validator using Gitea webhooks

  Go

  •

  GNU Affero General Public License v3.0

  •0•0•5•2•Updated May 8, 2023May 8, 2023