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@nimh-sfim Section on Functional Imaging Methods

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    31 repositories

    • nimh-sfim.github.io

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • lab-docs

      Public
      Lab documentation
      Vim Script
      •
      Creative Commons Zero v1.0 Universal
      •7•3•0•1•Updated Jul 2, 2025Jul 2, 2025

    • sleep-cognition

      Public
      EEG-fMRI Study on Sleep Restriction
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • multiecho-simulation

      Public
      Tools to simulate multi-echo fMRI time series
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • edgeevents

      Public
      MATLAB
      •
      Other
      •0•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • SFIM_physio

      Public
      MATLAB
      •0•1•0•0•Updated Mar 27, 2025Mar 27, 2025

    • fc_introspection

      Public
      Code associated with pre-print titled: In-Scanner Thoughts shape Resting-state Functional Connectivity: how participants “rest” matters.
      introspectionfmrifunctional-connectivityresting-state
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • manifold_learning_fmri

      Public
      Code associated with manuscript: "Manifold learning for fMRI time-varying functional connectivity" publicado en Frontiers in Human Neuroscience
      Jupyter Notebook
      •0•3•0•0•Updated Feb 11, 2025Feb 11, 2025

    • manifold_learning_fmri_demo_data

      Public
      0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • rtPupilPhase

      Public
      A repository for code and data associated with Kronemer et al., 2024
      MATLAB
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • me-ets

      Public
      Multi-echo application to edge timseries
      Jupyter Notebook
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • mapping_CSF_volume

      Public
      MATLAB
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • sfim_lib

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • rapid_decoding

      Public
      0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • Afterimage-Imagery-Behavioral

      Public
      MATLAB
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jul 13, 2024Jul 13, 2024

    • egi-pynetstation

      Public
      Python package to enable the use of a Python-based API for EGI's NetStation EEG amplifier interface.
      Python
      •
      GNU General Public License v3.0
      •6•13•0•1•Updated Nov 1, 2023Nov 1, 2023

    • ComplexMultiEcho1

      Public
      Python
      •0•4•0•0•Updated Aug 11, 2023Aug 11, 2023

    • SFIM_Frontiers_Neuroimaging_QC_Project

      Public
      For the Frontiers in Neuroimaging special call for papers; code and instructions used for the project.
      Shell
      •
      MIT License
      •0•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • hcp7t_fv_sleep

      Public
      Code for "Ultra-slow fluctuations in the fourth ventricle as a marker of drowsiness" Gonzalez-Castillo et al. 2022 Neuroimage
      fmriresting-state
      Jupyter Notebook
      •0•1•0•0•Updated Jan 31, 2023Jan 31, 2023

    • mffquery

      Public
      For querying mffs
      Python
      •3•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • lsd_pipelines_nih

      Public
      Neuroimgaing data processing pipelines used in the lab
      Python
      •
      MIT License
      •24•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • stc2gii_hack

      Public
      Python
      •3•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • dtm_tools

      Public
      Temporary tools to help with comparing decision tree modularized/unmodularized for tedana
      Python
      •1•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • ccap

      Public
      Offsets srt file captions
      Rust
      •1•0•0•0•Updated Jun 6, 2022Jun 6, 2022

    • gradient_remover

      Public
      Gradient Removal with templates
      Python
      •2•4•0•0•Updated Apr 12, 2022Apr 12, 2022

    • hpc_github

      Public
      Helpful tips for using GitHub on biowulf
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • PRJ_FAConn

      Public
      Code for supplementary analysis on multiple flip angle data previously published as a pre-print by University of Allahabad
      Jupyter Notebook
      •1•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • code-review-practice-2

      Public
      For code review practice with group 2
      0•0•0•2•Updated Mar 18, 2021Mar 18, 2021

    • sfim_dcm_anon

      Public
      Anonymizes dicom files coming from oxygen tarballs
      Python
      •
      GNU General Public License v2.0
      •0•0•1•0•Updated Dec 14, 2020Dec 14, 2020

    • dcmwrangle

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 2, 2020Dec 2, 2020