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    120 repositories

    • nmdp-bioinformatics-python-script-template

      Public template
      Project Template for Python Scripts
      Makefile
      •0•0•0•0•Updated May 29, 2025May 29, 2025

    • py-ard

      Public
      HLA ARD Reduction in Python
      hla
      Python
      •
      GNU Lesser General Public License v3.0
      •14•18•17•0•Updated May 19, 2025May 19, 2025

    • miring-validator

      Public
      Semantic Validator for MIRING-compliant HML
      Java
      •
      GNU Lesser General Public License v3.0
      •4•2•7•0•Updated May 16, 2025May 16, 2025

    • phycus

      Public
      Service used for curation of Haplotype Frequency
      Java
      •
      GNU Lesser General Public License v3.0
      •24•7•20•0•Updated May 14, 2025May 14, 2025

    • hml

      Public
      Histoimmunogenetics Markup Language (HML).
      GNU Lesser General Public License v3.0
      •6•4•13•0•Updated May 13, 2025May 13, 2025

    • nmdp-python-project-template

      Public template
      Python project template for NMDP Bioinformatics
      Python
      •
      GNU Lesser General Public License v3.0
      •2•1•0•0•Updated May 12, 2025May 12, 2025

    • dpb1-prediction

      Public
      DPB1 and TCE Prediction
      Python
      •3•0•3•1•Updated Mar 22, 2025Mar 22, 2025

    • dash

      Public
      Data Standards Hackathon for NGS based typing.
      HTML
      •
      GNU Lesser General Public License v3.0
      •13•13•15•0•Updated Feb 15, 2025Feb 15, 2025

    • py-graph-imputation

      Public
      Graph Imputation
      Python
      •
      GNU Lesser General Public License v3.0
      •8•2•5•0•Updated Jan 27, 2025Jan 27, 2025

    • lab-demo

      Public
      Demo for lab
      0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • asom

      Public
      ASOM: Age/Sex Optimal Matching
      R
      •1•0•0•1•Updated Jan 14, 2025Jan 14, 2025

    • ambiguous-genotypes

      Public
      sample data with ambiguous genotypes and the corresponding unambiguous genotype
      Apache License 2.0
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • wmda_mv4

      Public
      WMDA matching validation code
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • homebrew-tap

      Public
      Tap to install nmdp-bioinformatics software for Homebrew
      Ruby
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • hapi-fhir

      Public
      HAPI FHIR - Java API for HL7 FHIR Clients and Servers
      Java
      •
      Apache License 2.0
      •1.4k•2•0•7•Updated Sep 11, 2024Sep 11, 2024

    • tarr2fhir

      Public archive
      Convert tarr2fhir Sync4Genes - Versiti and GenDx
      Java
      •
      Apache License 2.0
      •1•1•0•9•Updated Jul 23, 2024Jul 23, 2024

    • imgt2aa

      Public
      extract aligned amino acid sequences from IMGT/HLA
      Perl
      •
      GNU Lesser General Public License v3.0
      •3•4•1•0•Updated Jun 27, 2024Jun 27, 2024

    • gfe-db

      Public
      Graph database representing IPD-IMGT/HLA sequence data as GFE
      gfe
      Makefile
      •
      GNU General Public License v3.0
      •15•10•18•2•Updated Jun 23, 2024Jun 23, 2024

    • nmdp-bioinformatics.github.io

      Public
      Organization Website for NMDP Bioinformatics
      HTML
      •2•1•0•0•Updated May 1, 2024May 1, 2024

    • imgt_biosqldb

      Public
      The IMGT/HLA sequence data persisted in a BioSQL database
      mysqlpythondockerbioinformaticshlahla-databasebiosql
      Python
      •
      GNU General Public License v3.0
      •3•3•0•0•Updated Mar 11, 2024Mar 11, 2024

    • gfe-docker-compose-app

      Public
      GFE service and GFE Database Docker Compose
      0•2•0•0•Updated Mar 11, 2024Mar 11, 2024

    • py-graph-match

      Public
      Graph Match
      Python
      •
      GNU Lesser General Public License v3.0
      •4•0•1•1•Updated Jan 29, 2024Jan 29, 2024

    • py-graph-em

      Public
      Python graph based Expectation Maximization
      Python
      •
      GNU Lesser General Public License v3.0
      •4•0•0•1•Updated Jan 29, 2024Jan 29, 2024

    • ngs

      Public
      Next generation sequencing (NGS/HTS) tools.
      Java
      •
      GNU Lesser General Public License v3.0
      •18•19•5•3•Updated Jan 25, 2024Jan 25, 2024

    • dpb1-expression

      Public
      DPB1 expression Tool
      hla
      Python
      •1•0•1•0•Updated Jan 22, 2024Jan 22, 2024

    • gfe-service

      Public
      GFE Webservice: Provides REST endpoints to GFE related functions
      gfe
      Python
      •
      GNU Lesser General Public License v3.0
      •7•3•8•3•Updated Jan 3, 2024Jan 3, 2024

    • pyard-legacy

      Public
      Legacy pyard repo. Not used anymore
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Jan 2, 2024Jan 2, 2024

    • py-gfe

      Public
      Python package for creating GFE notation from annotated sequences
      gfe
      Python
      •
      GNU General Public License v3.0
      •9•2•6•1•Updated Dec 11, 2023Dec 11, 2023

    • hml-validation-portal

      Public
      Portal for HML validation
      HTML
      •
      GNU Lesser General Public License v3.0
      •3•1•5•7•Updated Jul 18, 2023Jul 18, 2023

    • service-feature

      Public
      Enumerated sequence feature service.
      Java
      •
      GNU Lesser General Public License v3.0
      •10•2•7•1•Updated Jun 22, 2023Jun 22, 2023