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    38 repositories

    • dcm2niix

      Public
      dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
      researchjpegneurosciencemrineuroimagingmri-imagesdicom-imagesjpeg-imagedcmnii
      C++
      •
      Other
      •235•1k•4•2•Updated Jul 29, 2025Jul 29, 2025

    • MRIcroGL

      Public
      v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
      visualizationglslvolume-renderingbids-formatdicom-viewerlazarusopengldicomniftimricrogl
      Python
      •
      Other
      •34•236•4•1•Updated Jul 24, 2025Jul 24, 2025

    • niimath

      Public
      niimath - a clone of fslmaths. Try the live demo:
      C
      •
      Other
      •19•66•4•0•Updated Jul 23, 2025Jul 23, 2025

    • soop-dwi

      Public
      Curation and processing of diffusion images
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jul 17, 2025Jul 17, 2025

    • soop-ct

      Public
      Stroke Outcome Optimization Project (SOOP) Computed Tomography scripts
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jun 27, 2025Jun 27, 2025

    • CancelForWeb

      Public
      Simple web-based continuous measures for assessing spatial neglect
      HTML
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated May 29, 2025May 29, 2025

    • pythonScripts

      Public
      Handy Python scripts for neuroimaging
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • zlib

      Public
      Cloudflare fork of zlib with massive performance improvements
      C
      •
      Other
      •2.6k•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • pyScripts

      Public
      Handy Python scripts for neuroimaging
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • niivue-macacc

      Public
      NiiVue viewer for MACACC Dataset
      JavaScript
      •
      Other
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • minc-loader

      Public
      minc loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • trx-javascript

      Public
      JavaScript reader and benchmark for tractography streamline formats
      TypeScript
      •3•0•0•0•Updated Feb 16, 2025Feb 16, 2025

    • glb-loader

      Public
      GLTF glb loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •2•1•0•0•Updated Feb 13, 2025Feb 13, 2025

    • draco-loader

      Public
      Draco loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • vox-loader

      Public
      MagicaVoxel loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Feb 10, 2025Feb 10, 2025

    • ds-loader

      Public
      3ds loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • tiff-loader

      Public
      TIFF loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • niivue

      Public
      a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •94•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • niivue-niimath

      Public
      Example code demonstrating integrating niivue, niimath using a Web Worker
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •2•0•0•0•Updated Jul 28, 2024Jul 28, 2024

    • brainchop

      Public
      Brainchop: In-browser 3D MRI rendering and segmentation
      JavaScript
      •
      MIT License
      •54•1•0•0•Updated Jun 12, 2024Jun 12, 2024

    • niimath_tests

      Public
      Validation tests for niimath https://github.com/rordenlab/niimath
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

    • AphasiaResearchCohortQuery

      Public
      Obsolete repository, visit the AphasiaRecoveryCohortDemo
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Dec 20, 2023Dec 20, 2023

    • NIFTI-Reader-JS

      Public
      A JavaScript NIfTI file format reader.
      JavaScript
      •
      MIT License
      •31•0•0•0•Updated Apr 15, 2023Apr 15, 2023

    • MRIcroWeb

      Public
      NIfTI volume rendering using WebGL
      nifti-formatwebgl2volume-renderervolume-ray-casting
      JavaScript
      •
      MIT License
      •13•44•0•0•Updated Dec 28, 2022Dec 28, 2022

    • nii2meshWeb

      Public
      Online NIfTI voxels to triangulated mesh conversion
      objmrimedical-imagingmesh-generationmarching-cubesnifti-format3dmesh-simplification
      C
      •
      Other
      •4•24•0•0•Updated Dec 5, 2022Dec 5, 2022

    • i2nii

      Public
      Convert various image formats to NIfTI.
      Pascal
      •
      BSD 2-Clause "Simplified" License
      •3•13•0•0•Updated Jul 30, 2022Jul 30, 2022

    • MeshFormatsJS

      Public
      JavaScript testing for popular neuroimaging mesh formats
      C
      •
      BSD 2-Clause "Simplified" License
      •3•0•0•0•Updated Apr 25, 2022Apr 25, 2022

    • nii2mesh

      Public
      Convert NIfTI volume to triangulated mesh using marching cubes
      C
      •
      Other
      •21•2•0•0•Updated Apr 19, 2022Apr 19, 2022

    • niivue-1

      Public
      a WebGL2 based NIFTI volume viewer
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •94•1•0•0•Updated Mar 4, 2022Mar 4, 2022

    • Fast-Quadric-Mesh-Simplification

      Public
      WASM version of Fast Quadric Mesh Simplification
      C++
      •
      MIT License
      •251•0•0•0•Updated Feb 14, 2022Feb 14, 2022