SeqAn

All

50 repositories

FPGAlign
Public
CMake
•
Other
•1•0•0•0•Updated Jul 16, 2025Jul 16, 2025
seqan-std
Public
Implementation of several C++23 views
C++
•
Other
•2•0•0•0•Updated Jul 15, 2025Jul 15, 2025
needle
Public
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
bloom-filters minimizer ngs-data ibf seqan3
C++
•
Other
•7•14•7•2•Updated Jul 14, 2025Jul 14, 2025
dream-stellar
Public
Fast and exact local alignments
C++
•
BSD 3-Clause "New" or "Revised" License
•2•1•5•5•Updated Jul 8, 2025Jul 8, 2025
raptor
Public
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
filter bloom-filter threshold binning k-mer minimizer set-membership
C++
•
Other
•18•53•8•4•Updated Jul 7, 2025Jul 7, 2025
chopper
Public
A tool for partitioning a set of sequences into similar batches.
C++
•
BSD 3-Clause "New" or "Revised" License
•9•9•6•2•Updated Jun 29, 2025Jun 29, 2025
app-template
Public template
This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.
CMake
•
Other
•9•6•19•0•Updated Jun 29, 2025Jun 29, 2025
www.seqan.de
Public
SCSS
•
MIT License
•8•0•2•1•Updated Jun 24, 2025Jun 24, 2025
seqan3
Public
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics modern fasta blast seqan fastq samtools sequence-alignment fm-index sequence-analysis
C++
•
Other
•84•431•30•2•Updated Jun 21, 2025Jun 21, 2025
seqan
Public
SeqAn's official repository.
high-performance cpp14 indexing simd alignment bwt fasta blast fastq-format bioinfomatics
C++
•
Other
•171•489•105•4•Updated Jun 18, 2025Jun 18, 2025
actions
Public
Shell
•
Creative Commons Attribution 4.0 International
•2•0•0•0•Updated Jun 16, 2025Jun 16, 2025
hibf
Public
HIBF and IBF
C++
•
Other
•3•4•5•6•Updated Jun 16, 2025Jun 16, 2025
sharg-parser
Public
The modern argument parser for c++ tools
cpp modern-cpp argument-parsing command-line-parser cpp20
C++
•
Other
•7•11•15•4•Updated Jun 10, 2025Jun 10, 2025
sahara
Public
Approximate Pattern Matching with Search Schemes
C++
•1•0•1•0•Updated Jun 9, 2025Jun 9, 2025
ibf-fpga
Public
Mirror of https://git.zib.de/hpc-research/Projects/seqanatfpga/min-ibf-fpga-oneapi
C++
•0•2•0•0•Updated Apr 24, 2025Apr 24, 2025
ScavengerHunt
Public
Unix Scavenger Hunt
Shell
•4•0•0•0•Updated Apr 15, 2025Apr 15, 2025
stellar3
Public
the SwifT Exact LocaL AligneR
C++
•
Other
•2•0•0•1•Updated Dec 12, 2024Dec 12, 2024
lambda
Public
LAMBDA – the Local Aligner for Massive Biological DatA
bioinformatics high-performance metagenomics alignment protein-sequences ncbi-taxonomy blast blast-searches seqan
C++
•
Other
•20•81•2•1•Updated Aug 26, 2024Aug 26, 2024
hibf_benchmarks
Public
WIP HIBF benchmarks
Python
•
BSD 3-Clause "New" or "Revised" License
•2•0•1•2•Updated Aug 13, 2024Aug 13, 2024
cmake-scripts
Public
CMake
•1•0•0•0•Updated Mar 13, 2024Mar 13, 2024
lemon
Public
Clone of the latest release of the lemon library (only the headers)
C++
•
Other
•2•6•0•0•Updated Sep 8, 2023Sep 8, 2023
minions
Public
Comparison between different methods to simplify sequence data
k-mer minimizer set-membership
C++
•
BSD 3-Clause "New" or "Revised" License
•2•2•8•0•Updated Aug 24, 2023Aug 24, 2023
mason
Public
Tools for Biological Sequence Simulation
HTML
•
Other
•2•3•0•2•Updated May 17, 2023May 17, 2023
flexbar
Public
flexible barcode and adapter removal
C++
•
BSD 3-Clause "New" or "Revised" License
•27•80•21•1•Updated Feb 10, 2023Feb 10, 2023
library-template
Public template
WIP
CMake
•
Other
•1•1•0•0•Updated Feb 8, 2023Feb 8, 2023
io-playground
Public
WIP
C++
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 20, 2023Jan 20, 2023
iGenVar
Public
The official repository for the iGenVar project.
C++
•
BSD 3-Clause "New" or "Revised" License
•8•9•33•4•Updated Nov 23, 2022Nov 23, 2022
seqan3-infrastructure
Public
Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.
CMake
•2•1•0•0•Updated Oct 9, 2022Oct 9, 2022
mars
Public
Motif-based aligned RNA searcher
motif rna-structure descriptors
C++
•
Other
•2•0•0•0•Updated Aug 11, 2022Aug 11, 2022
vaquita
Public
Identification of structural variations
C++
•
Other
•4•12•9•2•Updated Jul 22, 2022Jul 22, 2022