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    114 repositories

    • cumulus-etl

      Public
      Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis
      nlpbioinformaticsfhirbdf-toolbox
      Python
      •
      Apache License 2.0
      •2•11•15•2•Updated Nov 15, 2024Nov 15, 2024

    • cumulus-library-suicidality-icd10

      Public
      Validation of ICD-10 code usage of Suicidality Cases Compared to Patient Chart Review
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Nov 13, 2024Nov 13, 2024

    • cumulus-library

      Public
      bioinformaticsfhirbdf-toolbox
      Python
      •
      Apache License 2.0
      •0•2•40•1•Updated Nov 13, 2024Nov 13, 2024

    • bulk-data-server

      Public
      TypeScript
      •
      Other
      •15•47•2•0•Updated Nov 12, 2024Nov 12, 2024

    • cumulus-aggregator

      Public
      Python
      •
      Apache License 2.0
      •0•2•20•1•Updated Nov 11, 2024Nov 11, 2024

    • client-py

      Public
      Python SMART on FHIR client
      fhirsmart-on-fhirfhir-clientfhir-parser
      Python
      •
      Other
      •211•593•23•0•Updated Nov 8, 2024Nov 8, 2024

    • cumulus-fhir-support

      Public
      FHIR support code for the Cumulus project
      bioinformaticsfhir
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Nov 1, 2024Nov 1, 2024

    • cumulus-library-data-metrics

      Public
      A data metrics study for the Cumulus project
      Jinja
      •
      Apache License 2.0
      •0•2•12•0•Updated Oct 25, 2024Oct 25, 2024

    • cumulus-library-opioid

      Public
      Opioid overdose, a SMART-Cumulus study
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 16, 2024Oct 16, 2024

    • fhir-crawler

      Public
      Utility to download resources from a FHIR server
      TypeScript
      •
      Apache License 2.0
      •2•4•0•0•Updated Oct 9, 2024Oct 9, 2024

    • infectious-symptoms-llm-study

      Public
      Detecting Infectious Respiratory Disease Symptoms using LLMs
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 2, 2024Oct 2, 2024

    • patient-browser

      Public
      JavaScript
      •68•86•6•12•Updated Sep 26, 2024Sep 26, 2024

    • health-cards-tests

      Public
      Demo for health wallet with Verifiable Credentials and Decentralized Identifiers
      TypeScript
      •
      MIT License
      •31•43•3•8•Updated Sep 10, 2024Sep 10, 2024

    • bulk-match-client

      Public
      A Node client for making bulk matching requests against FHIR servers
      TypeScript
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

    • bulk-match-provider

      Public
      Bulk Match Provider
      TypeScript
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 6, 2024Sep 6, 2024

    • client-js

      Public
      JavaScript client for FHIR
      TypeScript
      •
      Other
      •224•299•22•3•Updated Sep 5, 2024Sep 5, 2024

    • cumulus-library-umls

      Public
      A Unified Medical Language System® Metathesaurus study for the Cumulus project
      Python
      •0•0•3•0•Updated Aug 30, 2024Aug 30, 2024

    • cumulus-library-rxnorm

      Public
      Python
      •0•0•1•0•Updated Aug 27, 2024Aug 27, 2024

    • smart-launcher-v2

      Public
      SMART Launcher
      TypeScript
      •
      Apache License 2.0
      •17•18•2•1•Updated Aug 22, 2024Aug 22, 2024

    • cumulus

      Public
      Clinical investigation at population scale.
      Shell
      •
      Apache License 2.0
      •0•5•1•0•Updated Aug 22, 2024Aug 22, 2024

    • cumulus-library-covid

      Public
      Python
      •
      Apache License 2.0
      •0•0•5•0•Updated Aug 22, 2024Aug 22, 2024

    • cumulus-library-suicidality-los

      Public
      Study the increase in pediatric patients presenting to the emergency department with suicidality before and during the COVID-19 pandemic, and the subsequent impact on emergency department length of stay and boarding
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • cumulus-library-hypertension

      Public
      Hypertension case definition to support CDC chronic disease management and CMS measures
      Python
      •
      Apache License 2.0
      •0•1•8•0•Updated Aug 21, 2024Aug 21, 2024

    • bulk-import-consumer

      Public
      Bulk Data Import Server (Data Consumer)
      JavaScript
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 12, 2024Aug 12, 2024

    • smart-on-fhir.github.io

      Public
      SMART on FHIR Docs
      Jupyter Notebook
      •
      Other
      •88•84•23•11•Updated Aug 5, 2024Aug 5, 2024

    • chart-review

      Public
      Measure agreement between chart reviewers.
      bioinformaticslabel-studio
      Python
      •
      Apache License 2.0
      •1•3•9•0•Updated Jul 29, 2024Jul 29, 2024

    • fhir-parser

      Public
      A Python FHIR specification parser and class generator
      Python
      •
      Other
      •70•164•5•0•Updated Jul 22, 2024Jul 22, 2024

    • bulk-data-client

      Public
      JavaScript
      •
      Apache License 2.0
      •8•12•2•0•Updated Jun 18, 2024Jun 18, 2024

    • fhir-viewer

      Public
      In-browser viewer for FHIR resources
      JavaScript
      •
      Other
      •14•45•0•6•Updated May 5, 2024May 5, 2024

    • smart-health-links

      Public
      Static documentation site for SMART Health Links
      JavaScript
      •5•3•0•3•Updated May 1, 2024May 1, 2024