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    23 repositories

    • unipept

      Public
      🌐 Unipept frontend for metaproteomics data analysis
      data-visualizationdata-analysisuniprotmetaproteomicsunipept
      Vue
      •
      MIT License
      •4•25•22•13•Updated Feb 3, 2026Feb 3, 2026

    • unipept-api

      Public
      🛠️ Unipept API server
      Rust
      •
      MIT License
      •0•2•5•3•Updated Feb 3, 2026Feb 3, 2026

    • unipept-database

      Public
      🧾 Create database tables and indices for Unipept
      Shell
      •
      MIT License
      •2•0•1•1•Updated Feb 3, 2026Feb 3, 2026

    • FragGeneScanRs

      Public
      Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
      bioinformaticsgenomicsrust-langhidden-markov-modelgene-predictionshort-reads
      Rust
      •
      GNU General Public License v3.0
      •1•30•5•5•Updated Feb 3, 2026Feb 3, 2026

    • unipept-cli

      Public
      Unipept command line interface
      metaproteomicsunipept
      TypeScript
      •
      MIT License
      •2•5•9•1•Updated Feb 1, 2026Feb 1, 2026

    • unipept-index

      Public
      🔍 Unipept SSA index
      Rust
      •
      MIT License
      •1•0•7•2•Updated Feb 1, 2026Feb 1, 2026

    • unipept-visualizations

      Public
      📊 Unipept visualisations, packaged for easy reusability
      d3taxonomytreemapvisualizationstreeviewsunburstunipept
      TypeScript
      •
      MIT License
      •6•20•16•19•Updated Jan 24, 2026Jan 24, 2026

    • unipept-utilities

      Public
      A repository containing some utility scripts that are used for server administration, deployment and other management related tasks.
      Shell
      •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • libsais-packed

      Public
      libsais is a library for linear time suffix array based on induced sorting algorithm.
      C
      •
      Apache License 2.0
      •29•1•0•0•Updated Jul 7, 2025Jul 7, 2025

    • unipept-devcontainers

      Public
      Contains a set of feature definitions, specific to Unipept, for use in devcontainers (supported by both Intellij and VS Code).
      Shell
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • umgap

      Public
      A taxonomic classifier for shotgun metagenomics reads
      taxonomymetagenomics
      Rust
      •
      MIT License
      •6•11•4•0•Updated Apr 4, 2025Apr 4, 2025

    • docker-images

      Public
      📦 Collection of Docker-containers that support the inner workings of the Unipept project
      Dockerfile
      •0•0•3•1•Updated Mar 25, 2025Mar 25, 2025

    • pathway-pilot

      Public
      TypeScript
      •
      Apache License 2.0
      •0•5•1•0•Updated Dec 13, 2024Dec 13, 2024

    • peptonizer

      Public archive
      Python
      •0•0•0•1•Updated Dec 5, 2024Dec 5, 2024

    • ClassiCOL

      Public
      Python
      •3•0•0•1•Updated Sep 18, 2024Sep 18, 2024

    • unipept-desktop

      Public
      This is the desktop application that accompanies the Unipept project.
      Pep8
      •
      MIT License
      •0•8•34•18•Updated Aug 8, 2024Aug 8, 2024

    • unipept-web-components

      Public
      This repository contains isolated Vue-components that can be reused throughout multiple Unipept-projects.
      Vue
      •1•1•10•2•Updated Aug 5, 2024Aug 5, 2024

    • unipept-dev-features

      Public
      A repository containing some Unipept-specific features that can be included in Devcontainers.
      0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • unique-peptide-finder

      Public
      Python
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • eslint-config

      Public
      The ESLint configuration that's shared over all Unipept projects. This configuration is specifically aimed at projects that are using TypeScript and Vue.
      JavaScript
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • unipept-web

      Public archive
      Unipept repository containing the web frontend.
      Vue
      •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • FragGeneScanPlusPlus

      Public archive
      Scalable high-throughput short-read open reading frame prediction
      metagenomicsgene-prediction
      C
      •
      GNU General Public License v3.0
      •11•7•0•0•Updated Aug 24, 2021Aug 24, 2021

    • unipept-heatmap

      Public archive
      TypeScript
      •
      MIT License
      •0•0•2•1•Updated Mar 5, 2021Mar 5, 2021