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    33 repositories

    • dcaServerFrontend

      Public
      JavaScript
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • miRNA-Analysis

      Public
      0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • profiles

      Public
      A web app for displaying researcher profiles, providing user-editable information and basic pages to aesthetically promote and highlight researcher activities and achievements.
      PHP
      •
      MIT License
      •0•6•36•16•Updated Jun 18, 2025Jun 18, 2025

    • py-mfdca

      Public
      Simple Python Implementation of mean-field Direct Coupling Analysis
      D
      •1•4•0•0•Updated Jun 17, 2025Jun 17, 2025

    • seec-nt

      Public
      Python implementation of seec-nt
      Python
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • coevolution-portal-backend

      Public
      Python
      •1•0•0•0•Updated May 3, 2025May 3, 2025

    • Interactome-Analysis

      Public
      R
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • Nageotte-Nodule-Analysis

      Public
      Nageotte nodules in human DRG reveal neurodegeneration in painful diabetic neuropathy.
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • RNA-Data

      Public
      https://sensoryomics.shinyapps.io/RNA-Data/
      R
      •1•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • visium10x-spatial-transcriptomics-pipeline

      Public
      This repository provides an R-based pipeline for analyzing spatial RNA-seq data using Seurat, STDeconvolve, and Giotto. Designed to process and analyze spatial transcriptomics data through a sequence of well-defined steps, enabling in-depth exploration and interpretation of spatially resolved gene expression profiles.
      giottoseuratvisiumstdeconvolvevisium-analysis
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • Bulk-RNA-Seq-Nextflow-Pipeline

      Public
      This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.
      rna-seq-analysisbulk-rna-seqnextflow-pipelinesbulk-sequencing
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • ATACSeq-NextFlow-Pipeline

      Public
      This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.
      atac-seqatacseqatac-seq-pipeline
      Shell
      •
      MIT License
      •0•1•0•0•Updated Sep 24, 2024Sep 24, 2024

    • resource-catalog-plugin

      Public
      A WordPress plugin to manage and display a searchable, filterable catalog of resources.
      PHP
      •
      MIT License
      •0•2•0•0•Updated Jul 22, 2024Jul 22, 2024

    • visium_distance_plotting_tool

      Public
      The Visium Distance Plotting Tool is a python-based application that offers a range of interactive plots for analyzing visium single-cell data(e.g. csv files).
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • orgchart-wordpress-plugin

      Public
      A WordPress plugin for managing people and generating directories and org charts.
      pluginwordpresswordpress-pluginorg-chart
      PHP
      •
      MIT License
      •1•0•0•0•Updated May 14, 2024May 14, 2024

    • TRAP-Analysis

      Public
      TRAP-Analysis tool enables the investigation of cell-specific mRNA associations with ribosomes obtained from Translating Ribosome Affinity Purification (TRAP) sequencing.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 7, 2024May 7, 2024

    • dca_workshop

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.4k•0•0•0•Updated Dec 9, 2023Dec 9, 2023

    • OpenNOP

      Public
      Network Observability Platform for monitoring of OpenROADM-based multi layer optical networks
      TeX
      •0•1•0•0•Updated Jul 3, 2023Jul 3, 2023

    • sg-budget-breakdown

      Public
      A website that allows one to visualize the UT Dallas budget
      JavaScript
      •0•0•4•0•Updated Apr 19, 2023Apr 19, 2023

    • cayuse-connector

      Public
      A single-page web application providing an easy-to-use interface to interact with the Cayuse API.
      PHP
      •
      MIT License
      •0•1•0•0•Updated Dec 21, 2022Dec 21, 2022

    • openroadm_exporter

      Public
      Prometheus Exporter for OpenROADM Devices
      Go
      •
      MIT License
      •7•0•0•0•Updated Nov 13, 2022Nov 13, 2022

    • af2complex

      Public
      Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
      Python
      •18•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • profiles-wordpress-plugin

      Public
      PHP
      •
      MIT License
      •0•0•1•0•Updated Jul 7, 2022Jul 7, 2022

    • openfold

      Public
      Trainable PyTorch reproduction of AlphaFold 2
      Python
      •
      Apache License 2.0
      •607•0•0•0•Updated Feb 23, 2022Feb 23, 2022

    • utdallas-branding-bar

      Public
      A WordPress plugin to show the UT Dallas branding top bar
      PHP
      •
      MIT License
      •0•0•1•0•Updated Oct 5, 2021Oct 5, 2021

    • pain-test-01

      Public
      0•0•0•0•Updated Sep 23, 2021Sep 23, 2021

    • progen

      Public
      Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
      Python
      •
      MIT License
      •17•0•0•0•Updated Sep 8, 2021Sep 8, 2021

    • aws-ai-qna-bot

      Public
      Code samples related to "Creating a Question and Answer Bot with Amazon Lex and Amazon Alexa", published on the AWS AI Blog. QnABot (pronounced “Q and A Bot”), uses Amazon Lex and Amazon Alexa to provide a conversational interface to your “Questions and Answers”, so users can just ask their questions and get quick and relevant answers.
      JavaScript
      •
      Other
      •261•0•0•0•Updated Jul 3, 2021Jul 3, 2021

    • microsoft-teams-apps-company-communicator

      Public
      Company Communicator app template
      C#
      •
      MIT License
      •412•0•0•0•Updated Jun 5, 2021Jun 5, 2021