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Add /gene to CDS

enhancementNew feature or requestNew feature or request

Status: Open.

#400 In oschwengers/bakta;

· wshropshire opened on Oct 9, 2025

· 

v1.12.0

Support for Python 3.12

enhancementNew feature or requestNew feature or request

Status: Open.

#399 In oschwengers/bakta;

· verdurin opened on Oct 9, 2025

· 

v1.12.0

Slow build_biopython_sequence_list in insdc.py

enhancementNew feature or requestNew feature or request

Status: Open.

#397 In oschwengers/bakta;

· piotrkica opened on Oct 9, 2025

· 

v1.12.0

allow open gene prediction for linear contigs

enhancementNew feature or requestNew feature or request

Status: Open.

#390 In oschwengers/bakta;

· hunter-cameron opened on Sep 19, 2025

· 

v1.12.0

Minor change to "import_user_cdss" to ease stringency on feature import

enhancementNew feature or requestNew feature or request

Status: Open.

#389 In oschwengers/bakta;

· OliverDietrich opened on Sep 18, 2025

CRISPR prediction assertion error

bugSomething isn't workingSomething isn't working

upstreamShould be reported upstreamShould be reported upstream

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#356 In oschwengers/bakta;

· augustkx opened on Dec 13, 2024

Addition of custom codon table/improve 'rare' start codons prediction

enhancementNew feature or requestNew feature or request

Status: Open.

#308 In oschwengers/bakta;

· DanielleMStevens opened on Jul 24, 2024

tRNAscan-SE slow with multiple threads

enhancementNew feature or requestNew feature or request

Status: Open.

#289 In oschwengers/bakta;

· ohickl opened on May 21, 2024

Option to Skip the AMR detection step

enhancementNew feature or requestNew feature or request

Status: Open.

#268 In oschwengers/bakta;

· ghost opened on Jan 17, 2024

produce the --replicons input content based on the flye assembly_info.txt

enhancementNew feature or requestNew feature or request

Status: Open.

#256 In oschwengers/bakta;

· splaisan opened on Oct 31, 2023

Transfer annotations from similar genome

feature

Status: Open.

#247 In oschwengers/bakta;

· simone-pignotti opened on Oct 9, 2023

· 

Backlog

Macromolecular structure and integron annotation, custom features

enhancementNew feature or requestNew feature or request

Status: Open.

#117 In oschwengers/bakta;

· alexweisberg opened on Jul 28, 2022