Deploying to gh-pages from @ 2c5a3e7 🚀

_sources/comparison/data/graphdb.md.txt

@@ -24,6 +24,10 @@
 | {index}`Virtuoso <Graph Database; Virtuoso>` | | | | 
 ```
 
+## Oxigraph
+
+- [https://github.com/oxigraph/oxrdflib](oxrdflib) - integration with {index}`rdflib`
+
 ## TODO
 
 - What in the heck is {index}`SOLID` using?

_sources/comparison/index.md.txt

@@ -32,6 +32,16 @@ data/index
 - Repute.Social
 - LinkedTrust.us
 - https://ganarchy.github.io/ - pull request-less git
+- semantic hashing
+	- https://iscc.codes/#the-iscc-is - multipart content identifiers from [bengo](https://mastodon.social/@bengo/111615921362561222)
+	- [simhash](https://en.wikipedia.org/wiki/SimHash) - similarity-sensitive hashes, also from [bengo](https://mastodon.social/@bengo/111616070992289762)
+	- [hypervectors](https://techhub.social/@hosford42/111615949285396537)
+- Scholcomm-adjacent stuff
+	- from [Patrick Hochstenbach](https://openbiblio.social/@hochstenbach): [Event Notifications](https://www.eventnotifications.net/) - [paper](https://journal.code4lib.org/articles/17823), [spec](https://mellonscholarlycommunication.github.io/spec-orchestrator/)
+- [rdf/js](http://rdf.js.org/data-model-spec/) - ORM for RDF
+- [Willow Protocol](https://willowprotocol.org/)
+- [neurobagel](https://neurobagel.org/overview/)
+- [ActivityPods](https://github.com/assemblee-virtuelle/activitypods) - SOLID and ActivityPub
 
 ## See also
 

_sources/comparison/ld/rdf.md.txt

@@ -16,12 +16,28 @@ We depart from that vision, instead favoring radical vernacularism {cite}`saunde
 Return here re: RDF canonicalization and IPFS https://github.com/multiformats/multicodec/pull/261
 ```
 
+### RDF Basics
+
+#### RDF Datasets
+
+```{todo}
+Document RDF Datasets!
+
+- https://www.w3.org/TR/rdf11-concepts/#dfn-rdf-dataset
+- https://www.w3.org/TR/rdf11-datasets/
+```
+
+
+## Formats
+
 ```{index} JSON-LD
 ```
 ### JSON-LD
 
 
-
+```{todo}
+Document JSON-LD :)
+```
 
 ## Challenges
 
@@ -475,6 +491,7 @@ I'll just leave this example of encoding the pixels in one RGB video frame as a
 - [Turtle](https://www.w3.org/TR/rdf12-turtle/)
 - [N-ary relations in RDF](https://www.w3.org/TR/swbp-n-aryRelations/)
 - [RDF 1.1 Semantics](https://www.w3.org/TR/rdf11-mt/)
+- [SPARQL Entailment](https://www.w3.org/TR/sparql11-entailment/)
 
 ### Libraries
 
@@ -493,6 +510,8 @@ I'll just leave this example of encoding the pixels in one RGB video frame as a
 - [CORAL](https://github.com/jmchandonia/CORAL)
 - [SEMTAB](https://www.cs.ox.ac.uk/isg/challenges/sem-tab/) - competition for mapping tabular data to RDF
 - [SciSPARQL](https://www.ceur-ws.org/Vol-1272/paper_22.pdf) - an extension of SPARQL to include arrays.
+- [MAGiQ](https://www.vldb.org/pvldb/vol11/p1978-jamour.pdf) - using sparse arrays for RDF graphs
+  - [GSmart](https://arxiv.org/abs/2106.14038) (same thing)
 
 ### Example Datasets
 

_sources/comparison/ld/solid.md.txt

@@ -1 +1,6 @@
 # SOLID
+
+## (stub to not lose the reference)
+
+- footnote cite: https://fosstodon.org/@happyborg/111725564636879777
+- p2p in SOLID found at last! https://safenetforum.org/t/devcon-talk-supercharging-the-safe-network-with-project-solid/23081?u=happybeing

comparison/data/graphdb.html

@@ -311,10 +311,16 @@ <h2>Options<a class="headerlink" href="#options" title="Permalink to this headin
 </table>
 </div>
 </section>
+<section id="oxigraph">
+<h2>Oxigraph<a class="headerlink" href="#oxigraph" title="Permalink to this heading">#</a></h2>
+<ul class="simple">
+<li><p><a class="reference internal" href="#oxrdflib"><span class="xref myst">https://github.com/oxigraph/oxrdflib</span></a> - integration with <span class="target" id="index-9"></span>rdflib</p></li>
+</ul>
+</section>
 <section id="todo">
 <h2>TODO<a class="headerlink" href="#todo" title="Permalink to this heading">#</a></h2>
 <ul class="simple">
-<li><p>What in the heck is <span class="target" id="index-9"></span>SOLID using?</p></li>
+<li><p>What in the heck is <span class="target" id="index-10"></span>SOLID using?</p></li>
 </ul>
 </section>
 </section>
@@ -376,6 +382,7 @@ <h2>TODO<a class="headerlink" href="#todo" title="Permalink to this heading">#</
             <ul>
 <li><a class="reference internal" href="#">Graph Databases</a><ul>
 <li><a class="reference internal" href="#options">Options</a></li>
+<li><a class="reference internal" href="#oxigraph">Oxigraph</a></li>
 <li><a class="reference internal" href="#todo">TODO</a></li>
 </ul>
 </li>

comparison/index.html

@@ -330,6 +330,22 @@ <h2>To be categorized<a class="headerlink" href="#to-be-categorized" title="Perm
 <li><p>Repute.Social</p></li>
 <li><p>LinkedTrust.us</p></li>
 <li><p><a class="reference external" href="https://ganarchy.github.io/">https://ganarchy.github.io/</a> - pull request-less git</p></li>
+<li><p>semantic hashing</p>
+<ul>
+<li><p><a class="reference external" href="https://iscc.codes/#the-iscc-is">https://iscc.codes/#the-iscc-is</a> - multipart content identifiers from <a class="reference external" href="https://mastodon.social/&#64;bengo/111615921362561222">bengo</a></p></li>
+<li><p><a class="reference external" href="https://en.wikipedia.org/wiki/SimHash">simhash</a> - similarity-sensitive hashes, also from <a class="reference external" href="https://mastodon.social/&#64;bengo/111616070992289762">bengo</a></p></li>
+<li><p><a class="reference external" href="https://techhub.social/&#64;hosford42/111615949285396537">hypervectors</a></p></li>
+</ul>
+</li>
+<li><p>Scholcomm-adjacent stuff</p>
+<ul>
+<li><p>from <a class="reference external" href="https://openbiblio.social/&#64;hochstenbach">Patrick Hochstenbach</a>: <a class="reference external" href="https://www.eventnotifications.net/">Event Notifications</a> - <a class="reference external" href="https://journal.code4lib.org/articles/17823">paper</a>, <a class="reference external" href="https://mellonscholarlycommunication.github.io/spec-orchestrator/">spec</a></p></li>
+</ul>
+</li>
+<li><p><a class="reference external" href="http://rdf.js.org/data-model-spec/">rdf/js</a> - ORM for RDF</p></li>
+<li><p><a class="reference external" href="https://willowprotocol.org/">Willow Protocol</a></p></li>
+<li><p><a class="reference external" href="https://neurobagel.org/overview/">neurobagel</a></p></li>
+<li><p><a class="reference external" href="https://github.com/assemblee-virtuelle/activitypods">ActivityPods</a> - SOLID and ActivityPub</p></li>
 </ul>
 </section>
 <section id="see-also">

comparison/ld/rdf.html

@@ -278,8 +278,29 @@ <h2>RDF And Friends<a class="headerlink" href="#id2" title="Permalink to this he
 <p class="admonition-title">Important</p>
 <p>Return here re: RDF canonicalization and IPFS <a class="reference external" href="https://github.com/multiformats/multicodec/pull/261">https://github.com/multiformats/multicodec/pull/261</a></p>
 </div>
+<section id="rdf-basics">
+<h3>RDF Basics<a class="headerlink" href="#rdf-basics" title="Permalink to this heading">#</a></h3>
+<section id="rdf-datasets">
+<h4>RDF Datasets<a class="headerlink" href="#rdf-datasets" title="Permalink to this heading">#</a></h4>
+<div class="admonition-todo admonition" id="id3">
+<p class="admonition-title">Todo</p>
+<p>Document RDF Datasets!</p>
+<ul class="simple">
+<li><p><a class="reference external" href="https://www.w3.org/TR/rdf11-concepts/#dfn-rdf-dataset">https://www.w3.org/TR/rdf11-concepts/#dfn-rdf-dataset</a></p></li>
+<li><p><a class="reference external" href="https://www.w3.org/TR/rdf11-datasets/">https://www.w3.org/TR/rdf11-datasets/</a></p></li>
+</ul>
+</div>
+</section>
+</section>
+</section>
+<section id="formats">
+<h2>Formats<a class="headerlink" href="#formats" title="Permalink to this heading">#</a></h2>
 <section id="json-ld">
 <span id="index-2"></span><h3>JSON-LD<a class="headerlink" href="#json-ld" title="Permalink to this heading">#</a></h3>
+<div class="admonition-todo admonition" id="id4">
+<p class="admonition-title">Todo</p>
+<p>Document JSON-LD :)</p>
+</div>
 </section>
 </section>
 <section id="challenges">
@@ -755,24 +776,25 @@ <h3>Naming<a class="headerlink" href="#naming" title="Permalink to this heading"
 <h2>References<a class="headerlink" href="#references" title="Permalink to this heading">#</a></h2>
 <ul class="simple">
 <li><p><a class="reference external" href="https://www.w3.org/TR/rdf11-primer/">RDF 1.1 Primer</a></p></li>
-<li><p>W3C Recommendation on generating RDF from tabular data: <span id="id3">[<a class="reference internal" href="../../references.html#id18" title="Jeremy Tandy, Ivan Herman, and Gregg Kellogg. Generating RDF from Tabular Data on the Web. 2015-12-17. URL: https://www.w3.org/TR/csv2rdf/ (visited on 2023-06-28).">Tandy <em>et al.</em>, 2015</a>]</span></p>
+<li><p>W3C Recommendation on generating RDF from tabular data: <span id="id5">[<a class="reference internal" href="../../references.html#id18" title="Jeremy Tandy, Ivan Herman, and Gregg Kellogg. Generating RDF from Tabular Data on the Web. 2015-12-17. URL: https://www.w3.org/TR/csv2rdf/ (visited on 2023-06-28).">Tandy <em>et al.</em>, 2015</a>]</span></p>
 <ul>
 <li><p>Tabular data model: <a class="reference external" href="https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/#parsing">https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/#parsing</a></p></li>
 <li><p>Metadata model: <a class="reference external" href="https://www.w3.org/TR/2015/REC-tabular-metadata-20151217/">https://www.w3.org/TR/2015/REC-tabular-metadata-20151217/</a></p></li>
 </ul>
 </li>
-<li><p><span class="target" id="index-4"></span>JSON Schema in RDF: <span id="id4">[<a class="reference internal" href="../../references.html#id2" title="Victor Charpenay, Maxime Lefrançois, and María Poveda Villalón. JSON Schema in RDF. 2023-06-14. URL: https://www.w3.org/2019/wot/json-schema (visited on 2023-06-28).">Charpenay <em>et al.</em>, 2023</a>]</span></p></li>
+<li><p><span class="target" id="index-4"></span>JSON Schema in RDF: <span id="id6">[<a class="reference internal" href="../../references.html#id2" title="Victor Charpenay, Maxime Lefrançois, and María Poveda Villalón. JSON Schema in RDF. 2023-06-14. URL: https://www.w3.org/2019/wot/json-schema (visited on 2023-06-28).">Charpenay <em>et al.</em>, 2023</a>]</span></p></li>
 <li><p><a class="reference external" href="https://www.w3.org/TR/rdf12-turtle/">Turtle</a></p></li>
 <li><p><a class="reference external" href="https://www.w3.org/TR/swbp-n-aryRelations/">N-ary relations in RDF</a></p></li>
 <li><p><a class="reference external" href="https://www.w3.org/TR/rdf11-mt/">RDF 1.1 Semantics</a></p></li>
+<li><p><a class="reference external" href="https://www.w3.org/TR/sparql11-entailment/">SPARQL Entailment</a></p></li>
 </ul>
 <section id="libraries">
 <h3>Libraries<a class="headerlink" href="#libraries" title="Permalink to this heading">#</a></h3>
 <ul class="simple">
 <li><p><a class="reference external" href="https://github.com/digitalbazaar/jsonld.js">jsonld.js</a></p></li>
 <li><p><a class="reference external" href="https://github.com/digitalbazaar/rdf-canonize-native">rdf-canonize-native</a></p></li>
 <li><p><a class="reference external" href="https://github.com/biolink/biolink-model">biolink-model</a> for a nice example of generating multiple schema formats from a .yaml file.</p></li>
-<li><p><a class="reference external" href="https://linkml.io/">linkml</a> - modeling language for linked data <span id="id5">[<a class="reference internal" href="../../references.html#id11" title="Sierra Moxon, Harold Solbrig, Deepak Unni, Dazhi Jiao, Richard Bruskiewich, James Balhoff, Gaurav Vaidya, William Duncan, Harshad Hegde, Mark Miller, Matthew Brush, Nomi Harris, Melissa Haendel, and Christopher Mungall. The linked data modeling language (linkml): a general-purpose data modeling framework grounded in machine-readable semantics. In CEUR Workshop Proceedings, volume 3073, 148–151. CEUR-WS, 2021. URL: https://pure.johnshopkins.edu/en/publications/the-linked-data-modeling-language-linkml-a-general-purpose-data-m (visited on 2023-06-28).">Moxon <em>et al.</em>, 2021</a>]</span></p>
+<li><p><a class="reference external" href="https://linkml.io/">linkml</a> - modeling language for linked data <span id="id7">[<a class="reference internal" href="../../references.html#id11" title="Sierra Moxon, Harold Solbrig, Deepak Unni, Dazhi Jiao, Richard Bruskiewich, James Balhoff, Gaurav Vaidya, William Duncan, Harshad Hegde, Mark Miller, Matthew Brush, Nomi Harris, Melissa Haendel, and Christopher Mungall. The linked data modeling language (linkml): a general-purpose data modeling framework grounded in machine-readable semantics. In CEUR Workshop Proceedings, volume 3073, 148–151. CEUR-WS, 2021. URL: https://pure.johnshopkins.edu/en/publications/the-linked-data-modeling-language-linkml-a-general-purpose-data-m (visited on 2023-06-28).">Moxon <em>et al.</em>, 2021</a>]</span></p>
 <ul>
 <li><p>Multidimensional arrays in linkml <a class="reference external" href="https://linkml.io/linkml/howtos/multidimensional-arrays.html">https://linkml.io/linkml/howtos/multidimensional-arrays.html</a></p></li>
 </ul>
@@ -789,6 +811,11 @@ <h3>See Also<a class="headerlink" href="#see-also" title="Permalink to this head
 <li><p><a class="reference external" href="https://github.com/jmchandonia/CORAL">CORAL</a></p></li>
 <li><p><a class="reference external" href="https://www.cs.ox.ac.uk/isg/challenges/sem-tab/">SEMTAB</a> - competition for mapping tabular data to RDF</p></li>
 <li><p><a class="reference external" href="https://www.ceur-ws.org/Vol-1272/paper_22.pdf">SciSPARQL</a> - an extension of SPARQL to include arrays.</p></li>
+<li><p><a class="reference external" href="https://www.vldb.org/pvldb/vol11/p1978-jamour.pdf">MAGiQ</a> - using sparse arrays for RDF graphs</p>
+<ul>
+<li><p><a class="reference external" href="https://arxiv.org/abs/2106.14038">GSmart</a> (same thing)</p></li>
+</ul>
+</li>
 </ul>
 </section>
 <section id="example-datasets">
@@ -858,6 +885,13 @@ <h3>Example Datasets<a class="headerlink" href="#example-datasets" title="Permal
             <ul>
 <li><a class="reference internal" href="#">RDF and Friends</a><ul>
 <li><a class="reference internal" href="#id2">RDF And Friends</a><ul>
+<li><a class="reference internal" href="#rdf-basics">RDF Basics</a><ul>
+<li><a class="reference internal" href="#rdf-datasets">RDF Datasets</a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li><a class="reference internal" href="#formats">Formats</a><ul>
 <li><a class="reference internal" href="#json-ld">JSON-LD</a></li>
 </ul>
 </li>

comparison/ld/solid.html

@@ -136,7 +136,7 @@
           <svg class="theme-icon-when-light"><use href="#svg-sun"></use></svg>
         </button>
       </div>
-      <label class="toc-overlay-icon toc-header-icon no-toc" for="__toc">
+      <label class="toc-overlay-icon toc-header-icon" for="__toc">
         <div class="visually-hidden">Toggle table of contents sidebar</div>
         <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
       </label>
@@ -260,14 +260,21 @@
               <svg class="theme-icon-when-light"><use href="#svg-sun"></use></svg>
             </button>
           </div>
-          <label class="toc-overlay-icon toc-content-icon no-toc" for="__toc">
+          <label class="toc-overlay-icon toc-content-icon" for="__toc">
             <div class="visually-hidden">Toggle table of contents sidebar</div>
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
         <article role="main">
           <section id="solid">
 <h1>SOLID<a class="headerlink" href="#solid" title="Permalink to this heading">#</a></h1>
+<section id="stub-to-not-lose-the-reference">
+<h2>(stub to not lose the reference)<a class="headerlink" href="#stub-to-not-lose-the-reference" title="Permalink to this heading">#</a></h2>
+<ul class="simple">
+<li><p>footnote cite: <a class="reference external" href="https://fosstodon.org/&#64;happyborg/111725564636879777">https://fosstodon.org/&#64;happyborg/111725564636879777</a></p></li>
+<li><p>p2p in SOLID found at last! <a class="reference external" href="https://safenetforum.org/t/devcon-talk-supercharging-the-safe-network-with-project-solid/23081?u=happybeing">https://safenetforum.org/t/devcon-talk-supercharging-the-safe-network-with-project-solid/23081?u=happybeing</a></p></li>
+</ul>
+</section>
 </section>
 
         </article>
@@ -313,8 +320,27 @@ <h1>SOLID<a class="headerlink" href="#solid" title="Permalink to this heading">#
 
       </footer>
     </div>
-    <aside class="toc-drawer no-toc">
+    <aside class="toc-drawer">
+
 
+      <div class="toc-sticky toc-scroll">
+        <div class="toc-title-container">
+          <span class="toc-title">
+            On this page
+          </span>
+        </div>
+        <div class="toc-tree-container">
+          <div class="toc-tree">
+            <ul>
+<li><a class="reference internal" href="#">SOLID</a><ul>
+<li><a class="reference internal" href="#stub-to-not-lose-the-reference">(stub to not lose the reference)</a></li>
+</ul>
+</li>
+</ul>
+
+          </div>
+        </div>
+      </div>
 
 
     </aside>

genindex.html

@@ -601,6 +601,8 @@ <h2>R</h2>
     </ul></td>
     <td style="width: 33%; vertical-align: top;"><ul>
         <li><a href="comparison/ld/rdf.html#index-0">RDF</a>
+</li>
+        <li><a href="comparison/data/graphdb.html#index-9">rdflib</a>
 </li>
     </ul></td>
   </tr></table>
@@ -621,7 +623,7 @@ <h2>S</h2>
         </ul></li>
     </ul></td>
     <td style="width: 33%; vertical-align: top;"><ul>
-        <li><a href="comparison/data/graphdb.html#index-9">SOLID</a>
+        <li><a href="comparison/data/graphdb.html#index-10">SOLID</a>
 </li>
         <li>
     Storage

todo.html

@@ -278,6 +278,20 @@ <h1>TODO<a class="headerlink" href="#todo" title="Permalink to this heading">#</
 <p><strong>How does writing and querying an sqlite file actually work???</strong></p>
 </div>
 <p class="todo-source">(The <a class="reference internal" href="comparison/data/sqlite.html#id3"><em>original entry</em></a> is located in /home/runner/work/docs/docs/src/comparison/data/sqlite.md, line 137.)</p>
+<div class="admonition-todo admonition">
+<p class="admonition-title">Todo</p>
+<p>Document RDF Datasets!</p>
+<ul class="simple">
+<li><p><a class="reference external" href="https://www.w3.org/TR/rdf11-concepts/#dfn-rdf-dataset">https://www.w3.org/TR/rdf11-concepts/#dfn-rdf-dataset</a></p></li>
+<li><p><a class="reference external" href="https://www.w3.org/TR/rdf11-datasets/">https://www.w3.org/TR/rdf11-datasets/</a></p></li>
+</ul>
+</div>
+<p class="todo-source">(The <a class="reference internal" href="comparison/ld/rdf.html#id3"><em>original entry</em></a> is located in /home/runner/work/docs/docs/src/comparison/ld/rdf.md, line 23.)</p>
+<div class="admonition-todo admonition">
+<p class="admonition-title">Todo</p>
+<p>Document JSON-LD :)</p>
+</div>
+<p class="todo-source">(The <a class="reference internal" href="comparison/ld/rdf.html#id4"><em>original entry</em></a> is located in /home/runner/work/docs/docs/src/comparison/ld/rdf.md, line 38.)</p>
 </section>
 
         </article>