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17 Open 105 Closed
17 Open 105 Closed
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Issues list

Amber_inputs.ipynb issue during equilibration
#124 opened Nov 7, 2024 by hajnal-adam
MMPBSA and Protein files issue
#119 opened Oct 20, 2024 by noumanistic
Can't enable GPU
#118 opened Aug 25, 2024 by TonatiuCG666
Issue converting CG dcd to all atom dcd using the "Martini+cg2all.ipynb"
#117 opened Aug 8, 2024 by kabirbiswas
1
ValueError: The topology and CHAIN trajectory files don't have the same number of atoms!
#116 opened Jul 2, 2024 by johnnytam100
Hbond and SASA
#115 opened Jun 30, 2024 by hashimkardaar
Issues regarding scripts to run MD Simulation
#114 opened Jun 19, 2024 by nilanjana1996
2
Protein_ligand.ipynb
#113 opened May 24, 2024 by raphaelolipitz
1
PDB database structure containing small molecules with certain pattern not working in protein_ligand notebook
#112 opened May 18, 2024 by quantaosun
Simulating a metallo-protein Apo form
#111 opened May 17, 2024 by saraujo2023
RMSD
#110 opened May 4, 2024 by Salahalmulla
Martini+cg2all.ipynb | Parameters to generate the Martini topology
#108 opened Apr 29, 2024 by sflores14
1
Protein+Membranes.ipynb | Parameters to generate the topology
#107 opened Apr 29, 2024 by sflores14
1
Continuing trajectory analysis from previous MD simulation
#106 opened Apr 29, 2024 by tegarachsendo
1
Having Issues with the AlphaFold2+MD notebook about "no module named colabfold"
#100 opened Feb 8, 2024 by itzfredz
1
Protein_ligand.ipynb
#94 opened Dec 15, 2023 by zjun028
4
Simulating a metallo-protein with 2 ligands
#81 opened Sep 26, 2023 by sadiogo
7
ProTip! What’s not been updated in a month: updated:<2024-10-18.