Add get_pairs() method to export prioritized pair list without alignments

ekg · ekg · commit 18f08c0016bb · 2025-10-18T13:25:39.000-05:00
diff --git a/src/iterator.rs b/src/iterator.rs
@@ -140,6 +140,12 @@ impl<'a> AllPairIterator<'a> {
     pub fn pair_count(&self) -> usize {
         self.actual_pair_count
     }
+
+    /// Export the prioritized pair list without performing alignments
+    /// Returns pairs as (seq1_idx, seq2_idx) in priority order
+    pub fn get_pairs(self) -> Vec<(usize, usize)> {
+        self.pair_iter.collect()
+    }
 }
 
 impl<'a> Iterator for AllPairIterator<'a> {

Original file line number	Diff line number	Diff line change
`@@ -140,6 +140,12 @@ impl<'a> AllPairIterator<'a> {`
`140`	`140`	`pub fn pair_count(&self) -> usize {`
`141`	`141`	`self.actual_pair_count`
`142`	`142`	`}`
	`143`	`+`
	`144`	`+ /// Export the prioritized pair list without performing alignments`
	`145`	`+ /// Returns pairs as (seq1_idx, seq2_idx) in priority order`
	`146`	`+ pub fn get_pairs(self) -> Vec<(usize, usize)> {`
	`147`	`+ self.pair_iter.collect()`
	`148`	`+ }`
`143`	`149`	`}`
`144`	`150`
`145`	`151`	`impl<'a> Iterator for AllPairIterator<'a> {`