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feature request: odgi props #619

@adadiehl

Description

@adadiehl

odgi props: Describe a node's properties, including label length, sequence, depth, incoming and outgoing degree. Required args -i <input graph.og>, -g graph position ([[node_id][,offset[,(+|-)]**]**]) or node range (>405>410) or -G file with one graph position or node range per line. Options: -p/--paths-covered print all paths covering the given node, -r/--ref-path <path> Required if supplying node ranges. Reference path to traverse, printing props for each node in range.

# Print basic properties of a given graph node.
odgi props -i graph.path -g 405
# node_id label_length sequence depth in_degree out_degree
405 16 acagataaggccttta 5 1 2

# Print extended properties of a given graph node.
odgi props -i graph.path -g 405 -p
# node_id label_length sequence depth in_degree out_degree paths_crossing
405 16 acagataaggccttta 5 1 2 GRCh38#0#chr1,HG005#1#chr1,HG00438#2#chr1,HG004#0#chr1,HG003#0#chr1

# Print node properties for a range of nodes in a path.
odgi props -i graph.og -g >405>408 -r HG004#0#chr1
# node_id label_length sequence depth in_degree out_degree
405 16 acagataaggccttta 5 1 2
407 8 ggccttta 1 1 1
408 10 ccccttacta 5 2 1

odgi props -i graph.og -g >405>408 -r HG005#1#chr1
# node_id label_length sequence depth in_degree out_degree
405 16 acagataaggccttta 5 1 2
406 11 ggaattcaccg 4 1 1
408 10 ccccttacta 5 2 1

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