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v0.6.0

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@pavlin-policar pavlin-policar released this 25 Apr 19:32
· 148 commits to master since this release

Changes:

  • Remove affinites from TSNE construction, allow custom affinities and initialization in .fit method. This improves the API when dealing with non-tabular data. This is not backwards compatible.
  • Add metric="precomputed". This includes the addition of openTSNE.nearest_neighbors.PrecomputedDistanceMatrix and openTSNE.nearest_neighbors.PrecomputedNeighbors.
  • Add knn_index parameter to openTSNE.affinity classes.
  • Add (less-than-ideal) workaround for pickling Annoy objects.
  • Extend the range of recommended FFTW boxes up to 1000.
  • Remove deprecated openTSNE.nearest_neighbors.BallTree.
  • Remove deprecated openTSNE.callbacks.ErrorLogger.
  • Remove deprecated TSNE.neighbors_method property.
  • Add and set as default negative_gradient_method="auto".