Scripts from project: Estimating transcripts rates of gain and loss in lines from 7 populations of Drosophila melanogaster

The programs are distributed in 4 folders:

--> Folder 1 contains all scripts necessaries to detect de novo transcripts in the genomes --> FOlder 2 contains all scripts used to build orthology relashionships between transcripts based on 4 definitions of transcripts orthology --> Folder 3 contains the mathematicl models used in the paper --> Folder 4 contains python and R scripts used for data reshuffling and analyses.