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Looper does not overwrite pipestat config, should it?

brainstorming

priority-low

question

Status: Open.

#549 In pepkit/looper;

· donaldcampbelljr opened on Apr 7, 2025

Cannot use pipestat flag_file_dir in a downstream pipeline submitted by looper

Status: Open.

#548 In pepkit/looper;

· donaldcampbelljr opened on Mar 27, 2025

Looper does not populate environment variables for certain items in the pipestat config

Status: Open.

#547 In pepkit/looper;

· donaldcampbelljr opened on Mar 27, 2025

Cannot run through the Extended tutorial

Status: Open.

#546 In pepkit/looper;

· binbinZhao2017 opened on Mar 19, 2025

Error using <code>--sel-excl</code> flag: <code>TypeError: 'in &lt;string&gt;' requires string as left operand, not list</code>

bug

Status: Open.

#543 In pepkit/looper;

· nleroy917 opened on Feb 7, 2025

<code>looper.write_sample_yaml</code> pre-submit function assumes the sample has <code>sample_name</code> as an attribute

bug

likely-solved

Status: Open.

#541 In pepkit/looper;

· nleroy917 opened on Jan 28, 2025

Document subsample table and presubmission hooks

docs

Status: Open.

#540 In pepkit/looper;

· donaldcampbelljr opened on Jan 28, 2025

Running a looper pipeline ad hoc

enhancement

help wanted

question

UX

Status: Open.

#538 In pepkit/looper;

· nleroy917 opened on Nov 26, 2024

· 

v2.1.0

Misleading error message if pipeline_interface path does not exist

Status: Open.

#528 In pepkit/looper;

· nsheff opened on Oct 9, 2024

· 

v2.1.0

divvy dev suggestions

enhancement

Status: Open.

#527 In pepkit/looper;

· nsheff opened on Oct 9, 2024

· 

v2.1.0

how do to parallel-process files with looper locally -- lump them together, this will group several commands in one like:

Status: Open.

#498 In pepkit/looper;

· donaldcampbelljr opened on Jun 5, 2024

Speeding up looper CLI use

enhancement

Status: Open.

#476 In pepkit/looper;

· nsheff opened on Mar 12, 2024

· 

v2.1.0