Skip to content

xlavir v0.4.2 (2021-05-21) - nf-core/viralrecon v2.0 support
Compare
Choose a tag to compare
@peterk87 peterk87 released this 21 May 21:46
· 43 commits to master since this release
v0.4.2
aba5c1d
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.
  • Add support for nf-core/viralrecon version 2.0 (requires Mosdepth bed.gz files be output; needs custom modules.config like this one)
  • Nextclade CLI per sample results parsed into sheet showing useful info like Nextstrain clade, # of mutations, # of PCR primer changes
  • Added check that input directory exists and is a directory
  • Added sheet with xlavir info
  • Added Gene, Variant Effect, Variant Impact, Amino Acid Change to Variant Summary table
Assets 2
Loading