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1. HAFpipe-line HAFpipe-line Public

   calculate haplotype-derived allele frequencies for pool-seq samples

   Shell 7 1

2. tuba-seq tuba-seq Public

   Analysis pipeline and utilities for TUmor BArcoded DNA Sequencing

   Python 3 2

3. bioinformatics-one-liners bioinformatics-one-liners Public

   Forked from crazyhottommy/bioinformatics-one-liners

   my collection of bioinformatics one liners that is useful in my day-to-day work

4. OT2-Protocols OT2-Protocols Public

   Protocols for the Petrov Lab OT-2 Robot (WALL-E)

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5. POOLSEQ1_fastq_to_bam POOLSEQ1_fastq_to_bam Public

   scripts for QC-ing paired-end fastq files and mapping them to a reference genome

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6. POOLSEQ2_bam_to_rawAF POOLSEQ2_bam_to_rawAF Public

   scripts to calculate allele frequencies at segregating sites from bam files for a set of pool-seq samples

   Shell