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Update README.md
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nromashchenko authored Sep 29, 2023
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Expand Up @@ -68,7 +68,7 @@ If EPIK is not installed, run `./epik.py` from the EPIK directory instead.
| -s | States, `nucl` for DNA and `amino` for proteins | nucl |
| --omega | The user-defined threshold. Can be set higher than the one used when database was created. (If you are not sure, ignore this parameter.) | 1.5 |
| --mu | The proportion of the database to keep when filtering. Mutually exclusive with `--max-ram`. Should be a value in (0.0, 1.0] | 1.0 |
| --max-ram | The maximum amount of memory used to keep the database content. Mutually exclusive with `--mu`. Sets an approximate limit to EPIK's RAM consumption. | |
| --max-ram | The maximum amount of memory used to keep the database content. Mutually exclusive with `--mu`. Sets an approximate limit to EPIK's RAM consumption (i.e. the given limit might be exceeded but EPIK will consider it). Examples: 512, 256K, 42M, 4.2G. | |
| --threads | Number of parallel threads used for placement. EPIK should be compiled with OpenMP support enabled, i.e. `EPIK_OMP=ON`. (If you compile as we recommend, it is enabled) | 1 |

Also, see `epik.py place --help` for information.
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