Merge pull request #532 from merfort/update_scenariomip_mapping #1249
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| name: check | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| branches: [main, master] | |
| jobs: | |
| check: | |
| runs-on: ubuntu-latest | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| extra-repositories: "https://rse.pik-potsdam.de/r/packages" | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| lucode2 | |
| covr | |
| madrat | |
| magclass | |
| citation | |
| gms | |
| goxygen | |
| GDPuc | |
| # piam packages also available on CRAN (madrat, magclass, citation, | |
| # gms, goxygen, GDPuc) will usually have an outdated binary version | |
| # available; by using extra-packages we get the newest version | |
| - name: Run pre-commit checks | |
| shell: bash | |
| run: | | |
| python -m pip install pre-commit | |
| python -m pip freeze --local | |
| pre-commit run --show-diff-on-failure --color=always --all-files | |
| - name: Verify validation key | |
| shell: Rscript {0} | |
| run: lucode2:::validkey(stopIfInvalid = TRUE) | |
| - name: Verify that lucode2::buildLibrary was successful | |
| if: github.event_name == 'pull_request' | |
| shell: Rscript {0} | |
| run: lucode2:::isVersionUpdated() | |
| - name: Checks | |
| shell: Rscript {0} | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| lucode2::check(runLinter = FALSE) | |
| - name: Test coverage | |
| if: ${{ github.event_name != 'pull_request' }} | |
| shell: Rscript {0} | |
| run: | | |
| nonDummyTests <- setdiff(list.files("./tests/testthat/"), c("test-dummy.R", "_snaps")) | |
| if(length(nonDummyTests) > 0 && !lucode2:::loadBuildLibraryConfig()[["skipCoverage"]]) { | |
| coverage <- covr::package_coverage(quiet = FALSE) | |
| # The following function might be unnecessary if r-lib/covr#616 gets merged | |
| to_simple_codecov <- function(coverage) { | |
| fullLineCoverage <- covr:::per_line(coverage) | |
| data <- Map(function(fileCoverage) { | |
| resultCoverage <- lapply(fileCoverage$coverage, jsonlite::unbox) | |
| names(resultCoverage) <- seq_along(resultCoverage) | |
| return(resultCoverage) | |
| }, fullLineCoverage) | |
| return(jsonlite::toJSON(list("coverage" = data), na = "null")) | |
| } | |
| writeLines(to_simple_codecov(coverage), "simple-codecov.json") | |
| } | |
| env: | |
| NOT_CRAN: "true" | |
| - uses: codecov/codecov-action@v4 | |
| if: ${{ github.event_name != 'pull_request' }} | |
| with: | |
| file: ./simple-codecov.json | |
| plugin: noop | |
| disable_search: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |