v0.0.0.dev0

Changes

• added vq_vae_accelerate notebook and trained vq_vae model model4cells (#101) @ttunja
• adding the kmer metrics (#100) @hssn-20
• Adding notebook for filtering master_dataset (#76) @ssenan
• adding the time warping functionality (#63) @noahweber1
• Update README.md (#73) @Ryams
• DDIM Sampling implemented (#65) @mihirneal
• Resolve contributor list in an independant file (#25) @IhabBendidi
• Fixes formatting in the 'Tasks and Potential Roadmap' section (#1) @jxilt

🚀 Features

• pytorch-lightning/hydra-zen integration (#105) @ssenan
• merge codebase changes on main into default (#92) @cameronraysmith
• Fixed script pathing, now works as intended on cluster (#87) @ssenan
• Adding subscripts created from original single script (#84) @ssenan
• refactor: (minor) vq-vae (#61) @SauravMaheshkar
• Adding the modified NB (#60) @noahweber1

🪲 Fixes

• Changes all import lightning to import pytorch_lightning (#127) @ssenan
• Comment out config.py to resolve pre-commit parsing error (#99) @ssenan

🚨 Testing

• Update the unit tests (#71) @jamesthesnake

👷 Continuous Integration

• make release depend on build and docker (#129) @cameronraysmith
• add release workflows (#125) @cameronraysmith
• Comment out config.py to resolve pre-commit parsing error (#99) @ssenan
• add actions/stale for issues and prs (#82) @cameronraysmith
• add pre-commit configuration (#80) @cameronraysmith

📚 Documentation

• use smaller README image (#131) @cameronraysmith
• add documentation (#119) @cameronraysmith
• update metadata (#112) @cameronraysmith
• add actions/stale for issues and prs (#82) @cameronraysmith
• add contributor covenant code of conduct (#78) @cameronraysmith

🔨 Refactoring

• Removed validation metrics from sampling metrics (#108) @ssenan
• merge codebase changes on main into default (#92) @cameronraysmith
• Fixed script pathing, now works as intended on cluster (#87) @ssenan
• Adding subscripts created from original single script (#84) @ssenan
• refactor: (minor) vq-vae (#61) @SauravMaheshkar
• Adding the modified NB (#60) @noahweber1

📦 Dependencies

• add docker container (#121) @cameronraysmith
• add build system (#117) @cameronraysmith