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Empty deamination table

Status: Open.

#15 In pontussk/PMDtools;

· kjurdzinski opened on Jul 10, 2025

n variable not defined when running --first

Status: Open.

#14 In pontussk/PMDtools;

· kjurdzinski opened on Jul 10, 2025

warning due to change in python3 syntax

Status: Open.

#13 In pontussk/PMDtools;

· LeandroRitter opened on May 22, 2024

Problem plotting merged reads

Status: Open.

#12 In pontussk/PMDtools;

· arenvale opened on Jan 18, 2023

Faulty <code>DS:Z:</code> matching

Status: Open.

#9 In pontussk/PMDtools;

· etkayapar opened on Apr 20, 2021

<code>--first</code> parameter throws error in tagged release but not master branch

Status: Open.

#8 In pontussk/PMDtools;

· TCLamnidis opened on Mar 22, 2021

-n parameter fails to cleanly close samtools (v1.9) pipe

Status: Open.

#7 In pontussk/PMDtools;

· jfy133 opened on Dec 18, 2019

Python3 Incompatibilities

Status: Open.

#6 In pontussk/PMDtools;

· apeltzer opened on Nov 3, 2018

MD Handling potential issue

Status: Open.

#5 In pontussk/PMDtools;

· apeltzer opened on Jun 15, 2018