Bump tensorflow from 2.17.0 to 2.18.0 #1133
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docker Testing | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build pyiron/base | |
| timeout-minutes: 5 | |
| run: | | |
| docker build -t pyiron/base:latest base/ | |
| docker tag pyiron/base:latest pyiron/base:"$(date +%F)" | |
| - name: Build pyiron/md | |
| timeout-minutes: 5 | |
| run: | | |
| tail --lines=+5 base/environment.yml >> md/environment.yml | |
| docker build -t pyiron/md:latest md/ | |
| docker tag pyiron/md:latest pyiron/md:"$(date +%F)" | |
| - name: Build pyiron/continuum | |
| timeout-minutes: 5 | |
| run: | | |
| docker build -t pyiron/continuum:latest continuum/ | |
| docker tag pyiron/continuum:latest pyiron/continuum:"$(date +%F)" | |
| - name: Build pyiron/pyiron | |
| timeout-minutes: 5 | |
| run: | | |
| tail --lines=+5 md/environment.yml >> pyiron/environment.yml | |
| docker build -t pyiron/pyiron:latest pyiron/ | |
| docker tag pyiron/pyiron:latest pyiron/pyiron:"$(date +%F)" | |
| - name: Build pyiron/potentialworkshop | |
| timeout-minutes: 5 | |
| run: | | |
| tail --lines=+5 pyiron/environment.yml >> potentialworkshop/environment.yml | |
| docker build -t pyiron/potentialworkshop:latest potentialworkshop/ | |
| docker tag pyiron/potentialworkshop:latest pyiron/potentialworkshop:"$(date +%F)" | |
| - name: Build pyiron/experimental | |
| timeout-minutes: 5 | |
| run: | | |
| tail --lines=+5 base/environment.yml >> experimental/environment.yml | |
| docker build -t pyiron/experimental:latest experimental/ | |
| docker tag pyiron/experimental:latest pyiron/experimental:"$(date +%F)" | |
| - name: Build pyiron/mpie_cmti | |
| timeout-minutes: 5 | |
| run: | | |
| tail --lines=+5 pyiron/environment.yml >> mpie_cmti/environment.yml | |
| docker build -t pyiron/mpie_cmti:latest mpie_cmti/ | |
| docker tag pyiron/mpie_cmti:latest pyiron/mpie_cmti:"$(date +%F)" | |
| # Testing | |
| - run: docker images | |
| - name: Test pyiron/continuum | |
| timeout-minutes: 5 | |
| run: docker run --rm pyiron/continuum /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;' | |
| - name: Test pyiron/base | |
| timeout-minutes: 5 | |
| run: docker run --rm pyiron/base /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;' | |
| - name: Test pyiron/pyiron | |
| timeout-minutes: 20 | |
| run: docker run --rm pyiron/pyiron /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;' | |
| - name: Test pyiron/experimental | |
| timeout-minutes: 5 | |
| run: docker run --rm pyiron/experimental /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;' | |
| # Export Environments | |
| - run: mkdir -p environment; chmod 777 environment | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/base /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_base_$(date +%F).yml;' | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/md /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_md_$(date +%F).yml;' | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/continuum /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_continuum_$(date +%F).yml;' | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/pyiron /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_pyiron_$(date +%F).yml;' | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/potentialworkshop /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_potentialworkshop_$(date +%F).yml;' | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/experimental /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_experimental_$(date +%F).yml;' | |
| - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/mpie_cmti /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/mpie_cmti_$(date +%F).yml;' | |
| - run: ls -al environment | |