[Bot] Update dependencies (#2059) #4520

Job	Run time
Linters (mypy, flake8, etc.)	53s
Get qemu emulated architectures	11s
Test cibuildwheel building pyodide wheels	5m 45s
Test on ubuntu-latest (3.13)	15m 18s
Test on windows-latest (3.13)	15m 6s
Test on macos-13 (3.13)	15m 17s
Test on macos-14 (3.13)	12m 49s
Test on ubuntu-latest (3.8)	15m 19s
Test Linux aarch64 using qemu	14m 59s
Test Linux armv7l using qemu	9m 12s
Test Linux ppc64le using qemu	14m 58s
Test Linux s390x using qemu	14m 57s
	2h 14m 44s

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