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refactor for improved testing of parameter settings

Status: Open.

#182 In qiime2/q2-dada2;

· gregcaporaso opened on Jun 25, 2025

IMP: restructure dada2 invocation from R script to rpy2

Status: Open.

#172 In qiime2/q2-dada2;

· colinvwood opened on Dec 3, 2024

BUG:Can not run qiime dada2 denoise-ccs without primers or adapters

Status: Open.

#163 In qiime2/q2-dada2;

· cherman2 opened on Dec 11, 2023

ENH: include error model plots in denoise-* output

Status: Open.

#158 In qiime2/q2-dada2;

· nbokulich opened on Mar 9, 2023

dada2 drops samples without reads unfiltered reads from table but not denoising stats.

Status: Open.

#136 In qiime2/q2-dada2;

· dwthomas opened on Mar 30, 2021

dada2 justConcatenate

Status: Open.

#129 In qiime2/q2-dada2;

· ARW-UBT opened on Feb 23, 2020

Improved error reporting for malformed paired-end reads

Status: Open.

#97 In qiime2/q2-dada2;

· ConstantinoSchillebeeckx opened on Apr 24, 2018

denoise-paired: add flag for just concatenating paired reads

enhancement

Status: Open.

#93 In qiime2/q2-dada2;

· AstrobioMike opened on Apr 13, 2018

denoise-*: expose <code>--collapse-no-mismatch</code> parameter

Status: Open.

#92 In qiime2/q2-dada2;

· nbokulich opened on Mar 22, 2018

Add an explicit error for return code -9

enhancement

Status: Open.

#86 In qiime2/q2-dada2;

· ebolyen opened on Jan 29, 2018

Split filtering into its own command?

question

Status: Open.

#51 In qiime2/q2-dada2;

· benjjneb opened on Mar 12, 2017