Preserve integer64 class #1678
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # NOTE: This workflow is overkill for most R packages and | |
| # check-standard.yaml is likely a better choice. | |
| # usethis::use_github_action("check-standard") will install it. | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: "10 0 * * *" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ github.head_ref || github.sha }}-${{ github.base_ref || '' }} | |
| cancel-in-progress: true | |
| name: rcc | |
| jobs: | |
| rcc-smoke: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| sha: ${{ steps.commit.outputs.sha }} | |
| name: "Smoke test: stock R" | |
| # Begin custom: services | |
| # End custom: services | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/workflows/rate-limit | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: ./.github/workflows/git-identity | |
| - uses: ./.github/workflows/custom/before-install | |
| if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
| - uses: ./.github/workflows/install | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| install-r: false | |
| cache-version: rcc-smoke-2 | |
| needs: check | |
| extra-packages: any::rcmdcheck any::roxygen2 r-lib/styler | |
| - uses: ./.github/workflows/custom/after-install | |
| if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
| - uses: ./.github/workflows/update-snapshots | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
| - uses: ./.github/workflows/style | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
| - uses: ./.github/workflows/roxygenize | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
| - id: commit | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
| uses: ./.github/workflows/commit | |
| - uses: ./.github/workflows/check | |
| with: | |
| results: ${{ runner.os }}-smoke-test | |
| # Runs in a separate workflow, because it's using dev pkgdown | |
| # which might bring in other dev dependencies | |
| pkgdown: | |
| needs: rcc-smoke | |
| runs-on: ubuntu-latest | |
| name: "pkgdown" | |
| # Begin custom: services | |
| # End custom: services | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.rcc-smoke.outputs.sha }} | |
| - uses: ./.github/workflows/rate-limit | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: ./.github/workflows/git-identity | |
| if: github.event_name == 'push' | |
| - uses: ./.github/workflows/custom/before-install | |
| if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
| - uses: ./.github/workflows/install | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| install-r: false | |
| cache-version: pkgdown-1 | |
| needs: website | |
| extra-packages: r-lib/pkgdown local::. | |
| - uses: ./.github/workflows/custom/after-install | |
| if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
| - uses: ./.github/workflows/pkgdown-build | |
| if: github.event_name != 'push' | |
| - uses: ./.github/workflows/pkgdown-deploy | |
| if: github.event_name == 'push' | |
| # Windows checks can be run in parallel and independently | |
| # when they alone take as long as the smoke and full tests combined. | |
| # To achieve this, remove the "needs:" element below. | |
| rcc-windows: | |
| # Begin custom: early run | |
| needs: rcc-smoke | |
| # End custom: early run | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.desc }} | |
| # Begin custom: services | |
| # End custom: services | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| # Use 3.6 to trigger usage of RTools35 | |
| - {os: windows-latest, r: '3.6'} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.rcc-smoke.outputs.sha }} | |
| - uses: ./.github/workflows/custom/before-install | |
| if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
| - uses: ./.github/workflows/install | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| cache-version: rcc-windows-1 | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| needs: check | |
| - uses: ./.github/workflows/custom/after-install | |
| if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
| - uses: ./.github/workflows/update-snapshots | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
| - uses: ./.github/workflows/check | |
| with: | |
| results: ${{ runner.os }}-r${{ matrix.config.r }} | |
| rcc-full: | |
| needs: rcc-smoke | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.desc }} | |
| # Begin custom: services | |
| # End custom: services | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release'} | |
| # Use older ubuntu to maximise backward compatibility | |
| - {os: ubuntu-22.04, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-22.04, r: 'release', covr: true, desc: 'with covr'} | |
| - {os: ubuntu-22.04, r: 'oldrel-1'} | |
| # Begin custom: R 3.6 | |
| - {os: ubuntu-22.04, r: 'oldrel-2'} | |
| # End custom: R 3.6 | |
| # Begin custom: R 3.5 | |
| - {os: ubuntu-22.04, r: 'oldrel-3'} | |
| # End custom: R 3.5 | |
| # Begin custom: R 3.4 | |
| - {os: ubuntu-22.04, r: 'oldrel-4'} | |
| # End custom: R 3.4 | |
| # Begin custom: matrix elements | |
| # End custom: matrix elements | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.rcc-smoke.outputs.sha }} | |
| - uses: ./.github/workflows/custom/before-install | |
| if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
| - uses: ./.github/workflows/install | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| cache-version: rcc-full-1 | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| needs: check | |
| - uses: ./.github/workflows/custom/after-install | |
| if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
| - uses: ./.github/workflows/update-snapshots | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
| - uses: ./.github/workflows/check | |
| with: | |
| results: ${{ runner.os }}-r${{ matrix.config.r }} | |
| suggests-matrix: | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| name: Collect suggests deps | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: ./.github/workflows/rate-limit | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - id: set-matrix | |
| uses: ./.github/workflows/dep-matrix-suggests | |
| check-matrix: | |
| runs-on: ubuntu-22.04 | |
| needs: suggests-matrix | |
| name: Check deps | |
| if: ${{ needs.matrix.outputs.matrix != '' }} | |
| steps: | |
| - name: Install json2yaml | |
| run: | | |
| sudo npm install -g json2yaml | |
| - name: Check matrix definition | |
| run: | | |
| matrix='${{ needs.matrix.outputs.matrix }}' | |
| echo $matrix | |
| echo $matrix | jq . | |
| echo $matrix | json2yaml | |
| rcc-suggests: | |
| needs: | |
| - suggests-matrix | |
| - rcc-smoke | |
| runs-on: ubuntu-22.04 | |
| name: Without ${{ matrix.package }} | |
| if: ${{ needs.suggests-matrix.outputs.matrix != '' }} | |
| # Begin custom: services | |
| # End custom: services | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{fromJson(needs.suggests-matrix.outputs.matrix)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/workflows/custom/before-install | |
| if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
| - uses: ./.github/workflows/install | |
| with: | |
| install-r: false | |
| cache-version: rcc-dev-${{ matrix.package }}-1 | |
| needs: check | |
| extra-packages: "any::rcmdcheck any::remotes ." | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Remove ${{ matrix.package }} and all strong dependencies | |
| run: | | |
| pkg <- "${{ matrix.package }}" | |
| pkgs <- tools::package_dependencies(pkg, reverse = TRUE)[[1]] | |
| installed <- rownames(utils::installed.packages()) | |
| to_remove <- c(pkg, intersect(pkgs, installed)) | |
| print(to_remove) | |
| remove.packages(to_remove) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo") | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: ./.github/workflows/custom/after-install | |
| if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
| - name: Define _R_CHECK_FORCE_SUGGESTS_ | |
| run: | | |
| cat('_R_CHECK_FORCE_SUGGESTS_=false\n', file = Sys.getenv("GITHUB_ENV"), append = TRUE) | |
| shell: Rscript {0} | |
| - name: Must allow NOTEs, even with _R_CHECK_FORCE_SUGGESTS_ | |
| run: | | |
| if (Sys.getenv("RCMDCHECK_ERROR_ON") %in% c("", "note")) { | |
| cat('RCMDCHECK_ERROR_ON="warning"\n', file = Sys.getenv("GITHUB_ENV"), append = TRUE) | |
| } | |
| shell: Rscript {0} | |
| - name: Check env vars | |
| run: | | |
| print(Sys.getenv('_R_CHECK_FORCE_SUGGESTS_')) | |
| print(Sys.getenv('RCMDCHECK_ERROR_ON')) | |
| shell: Rscript {0} | |
| - uses: ./.github/workflows/check | |
| with: | |
| results: ${{ matrix.package }} |