Preserve integer64 class #1427
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Adapted from backends.yaml, with contents from odbc/db.yaml | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: '0 8 * * *' | |
| name: backends odbc | |
| jobs: | |
| matrix: | |
| runs-on: ubuntu-20.04 | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # https://github.blog/changelog/2020-04-15-github-actions-new-workflow-features/ | |
| - id: set-matrix | |
| run: | | |
| matrix=$(( | |
| echo '{ "include" : [' | |
| sed -n "/^REVDEP *:= */ { s///; p }" revdep-dev/Makefile | sed 's/ /,\n/g' | grep odbc | sed -r 's/^odbc-([^,]*)(,?)$/{ "database": "\1", "package": "odbc" }\2/' | |
| echo " ]}" | |
| ) | jq -c .) | |
| echo $matrix | |
| echo $matrix | jq . | |
| echo "matrix=$matrix" >> $GITHUB_OUTPUT | |
| check-matrix: | |
| runs-on: ubuntu-latest | |
| needs: matrix | |
| steps: | |
| - name: Install json2yaml | |
| run: | | |
| sudo npm install -g json2yaml | |
| - name: Check matrix definition | |
| run: | | |
| matrix='${{ needs.matrix.outputs.matrix }}' | |
| echo $matrix | |
| echo $matrix | jq . | |
| echo $matrix | json2yaml | |
| backend: | |
| needs: matrix | |
| # Need Ubuntu 20.04 for remotes::system_requirements() | |
| runs-on: ubuntu-20.04 | |
| services: | |
| postgres: | |
| image: postgres | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: password | |
| POSTGRES_DB: test | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| sqlserver: | |
| image: mcr.microsoft.com/mssql/server:2017-latest-ubuntu | |
| ports: | |
| - 1433:1433 | |
| env: | |
| ACCEPT_EULA: Y | |
| SA_PASSWORD: Password12 | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{fromJson(needs.matrix.outputs.matrix)}} | |
| name: ${{ matrix.database }} | |
| env: | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| ODBCSYSINI: ${{ github.workspace }}/.github/odbc | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check rate limits | |
| run: | | |
| curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit | |
| shell: bash | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install remotes | |
| run: | | |
| if (!requireNamespace("curl", quietly = TRUE)) install.packages("curl") | |
| if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes") | |
| shell: Rscript {0} | |
| - name: Clone backend | |
| run: | | |
| make -C revdep-dev ${{ matrix.package }} | |
| - name: Prepare cache keys | |
| if: runner.os != 'Windows' | |
| run: | | |
| saveRDS(remotes::dev_package_deps("revdep-dev/${{ matrix.package }}", dependencies = TRUE, type = .Platform$pkgType), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: backends-${{ hashFiles('.github/R-version') }}-2-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: backends-${{ hashFiles('.github/R-version') }}-2- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| # "22.04" fails here | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04", path = "revdep-dev/${{ matrix.package }}"))') | |
| - name: Install package and dependencies | |
| run: | | |
| remotes::install_local("revdep-dev/${{ matrix.package }}", dependencies = TRUE, type = .Platform$pkgType) | |
| remotes::install_local(".", type = .Platform$pkgType, force = TRUE) | |
| remotes::install_cran("pkgbuild") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo") | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| # Begin custom: after install | |
| - name: Setup MySQL | |
| if: matrix.database == 'mysql' | |
| run: | | |
| sudo systemctl start mysql.service | |
| mysql -uroot -h127.0.0.1 -proot -e 'CREATE DATABASE `test`;' | |
| .github/odbc/install-mariadb-driver.sh | |
| - name: Install SQLite Driver | |
| if: matrix.database == 'sqlite' | |
| run: | | |
| sudo apt-get install -y libsqliteodbc | |
| - name: Install PostgreSQL Driver | |
| if: matrix.database == 'postgres' | |
| run: | | |
| sudo apt-get install -y unixodbc-dev odbc-postgresql devscripts | |
| - name: Install SQL Server Driver | |
| if: matrix.database == 'sql-server' | |
| run: | | |
| curl https://packages.microsoft.com/keys/microsoft.asc | apt-key add - | |
| curl https://packages.microsoft.com/config/ubuntu/20.04/prod.list > /etc/apt/sources.list.d/mssql-release.list | |
| apt-get update | |
| ACCEPT_EULA=Y apt-get install -y msodbcsql17 | |
| ln -s /opt/microsoft/msodbcsql17/lib64/libmsodbcsql-17.*.so.* /opt/microsoft/msodbcsql17/lib64/libmsodbcsql-17.so | |
| shell: sudo bash {0} | |
| - name: Install locally to avoid error with test_local() | |
| run: | | |
| R CMD INSTALL revdep-dev/${{ matrix.package }} | |
| env: | |
| LIB_DIR: /usr/lib/x86_64-linux-gnu/ | |
| INCLUDE_DIR: /usr/include | |
| # End custom: after install | |
| - name: Test backend | |
| run: | | |
| make -C revdep-dev test-${{ matrix.package }}-${{ matrix.database }} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: revdep-dev/${{ matrix.package }} | |
| - name: Check rate limits | |
| if: always() | |
| run: | | |
| curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit | |
| shell: bash |