Upkeep 2024 10

.Rbuildignore

@@ -1,5 +1,6 @@
 ^docs$
 ^_pkgdown\.yml$
+^pkgdown$
 ^README\.Rmd$
 ^codecov\.yml$
 visual_test

.github/workflows/R-CMD-check.yaml

@@ -10,7 +10,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
@@ -25,17 +27,15 @@ jobs:
           - {os: macos-latest,   r: 'release'}
 
           - {os: windows-latest, r: 'release'}
-          # Use 3.6 to trigger usage of RTools35
-          - {os: windows-latest, r: '3.6'}
-          # use 4.1 to check with rtools40's older compiler
-          - {os: windows-latest, r: '4.1'}
-
-          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
-          - {os: ubuntu-latest,   r: 'oldrel-1'}
-          - {os: ubuntu-latest,   r: 'oldrel-2'}
-          - {os: ubuntu-latest,   r: 'oldrel-3'}
-          - {os: ubuntu-latest,   r: 'oldrel-4'}
+          # use 4.0 or 4.1 to check with rtools40's older compiler
+          - {os: windows-latest, r: 'oldrel-4'}
+
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-latest,  r: 'oldrel-1'}
+          - {os: ubuntu-latest,  r: 'oldrel-2'}
+          - {os: ubuntu-latest,  r: 'oldrel-3'}
+          - {os: ubuntu-latest,  r: 'oldrel-4'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/pkgdown.yaml

@@ -9,7 +9,9 @@ on:
     types: [published]
   workflow_dispatch:
 
-name: pkgdown
+name: pkgdown.yaml
+
+permissions: read-all
 
 jobs:
   pkgdown:

.github/workflows/pr-commands.yaml

@@ -4,7 +4,9 @@ on:
   issue_comment:
     types: [created]
 
-name: Commands
+name: pr-commands.yaml
+
+permissions: read-all
 
 jobs:
   document:
@@ -13,6 +15,8 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
       - uses: actions/checkout@v4
 
@@ -50,6 +54,8 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
       - uses: actions/checkout@v4
 

.github/workflows/test-coverage.yaml

@@ -6,7 +6,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -23,18 +25,27 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |

DESCRIPTION

@@ -15,7 +15,7 @@ License: MIT + file LICENSE
 URL: https://gtable.r-lib.org, https://github.com/r-lib/gtable
 BugReports: https://github.com/r-lib/gtable/issues
 Depends:
-    R (>= 3.5)
+    R (>= 4.0)
 Imports:
     cli,
     glue,
@@ -33,6 +33,7 @@ VignetteBuilder:
     knitr
 Config/Needs/website: tidyverse/tidytemplate
 Config/testthat/edition: 3
+Config/usethis/last-upkeep: 2024-10-25
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2

README.Rmd

@@ -4,7 +4,9 @@ output: github_document
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-```{r setup, include = FALSE}
+```{r}
+#| label: setup
+#| include: false
 knitr::opts_chunk$set(
   collapse = TRUE,
   comment = "#>",
@@ -20,7 +22,7 @@ options(width = 90)
 <!-- badges: start -->
 [![R-CMD-check](https://github.com/r-lib/gtable/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/r-lib/gtable/actions/workflows/R-CMD-check.yaml)
 [![CRAN status](https://www.r-pkg.org/badges/version/gtable)](https://CRAN.R-project.org/package=gtable)
-[![Codecov test coverage](https://codecov.io/gh/r-lib/gtable/branch/main/graph/badge.svg)](https://app.codecov.io/gh/r-lib/gtable?branch=main)
+[![Codecov test coverage](https://codecov.io/gh/r-lib/gtable/graph/badge.svg)](https://app.codecov.io/gh/r-lib/gtable)
 [![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 <!-- badges: end -->
 
@@ -44,7 +46,8 @@ pak::pak("r-lib/gtable")
 ## Example
 ggplot2 uses gtable for laying out plots, and it is possible to access the gtable representation of a plot for inspection and modification:
 
-```{r, message=FALSE}
+```{r}
+#| message: false
 library(gtable)
 library(ggplot2)
 
@@ -60,13 +63,20 @@ A gtable object is a collection of graphic elements along with their placement i
 A gtable object is itself a grob, and can thus be drawn using standard functions from the grid package:
 
 ```{r}
+#| fig-alt: >
+#|   A scatterplot of miles per gallon against displacement based on the mtcars
+#|   dataset. The plot is rendered by first converting the ggplot object to a
+#|   gtable and then plotting the gtable
 library(grid)
 grid.draw(p_table) # alternative use plot(p_table)
 ```
 
 While most people will interact with gtable through ggplot2, it is possible to build a plot from the ground up.
 
 ```{r}
+#| fig-alt: >
+#|   A scatterplot of random numbers. The scatterplot is created by combining
+#|   separate grobs created with grid using gtable.
 # Construct some graphical elements using grid
 points <- pointsGrob(
   x = runif(10),

README.md

@@ -9,7 +9,7 @@
 [![CRAN
 status](https://www.r-pkg.org/badges/version/gtable)](https://CRAN.R-project.org/package=gtable)
 [![Codecov test
-coverage](https://codecov.io/gh/r-lib/gtable/branch/main/graph/badge.svg)](https://app.codecov.io/gh/r-lib/gtable?branch=main)
+coverage](https://codecov.io/gh/r-lib/gtable/graph/badge.svg)](https://app.codecov.io/gh/r-lib/gtable)
 [![Lifecycle:
 stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 <!-- badges: end -->
@@ -92,7 +92,7 @@ library(grid)
 grid.draw(p_table) # alternative use plot(p_table)
 ```
 
-<img src="man/figures/README-unnamed-chunk-2-1.png" width="100%" />
+<img src="man/figures/README-unnamed-chunk-3-1.png" alt="A scatterplot of miles per gallon against displacement based on the mtcars dataset. The plot is rendered by first converting the ggplot object to a gtable and then plotting the gtable" width="100%" />
 
 While most people will interact with gtable through ggplot2, it is
 possible to build a plot from the ground up.
@@ -126,4 +126,4 @@ plot <- gtable_add_grob(
 grid.draw(plot)
 ```
 
-<img src="man/figures/README-unnamed-chunk-3-1.png" width="100%" />
+<img src="man/figures/README-unnamed-chunk-4-1.png" alt="A scatterplot of random numbers. The scatterplot is created by combining separate grobs created with grid using gtable." width="100%" />

pkgdown/favicon/site.webmanifest

@@ -0,0 +1,21 @@
+{
+  "name": "",
+  "short_name": "",
+  "icons": [
+    {
+      "src": "/web-app-manifest-192x192.png",
+      "sizes": "192x192",
+      "type": "image/png",
+      "purpose": "maskable"
+    },
+    {
+      "src": "/web-app-manifest-512x512.png",
+      "sizes": "512x512",
+      "type": "image/png",
+      "purpose": "maskable"
+    }
+  ],
+  "theme_color": "#ffffff",
+  "background_color": "#ffffff",
+  "display": "standalone"
+}

tests/testthat/_snaps/gtable.md

@@ -1,11 +1,43 @@
 # as.gtable sensibly converts objects
 
-    Can't convert an integer vector to a <gtable>.
+    Code
+      as.gtable(g2, widths = unit(c(1, 1), "cm"))
+    Condition
+      Warning:
+      `widths` truncated to length 1.
+    Output
+      TableGrob (1 x 1) "layout": 1 grobs
+        z     cells   name                  grob
+      1 1 (1-1,1-1) layout circle[GRID.circle.9]
 
 ---
 
-    Arguments in `...` must be used.
-    x Problematic argument:
-    * foo = "bar"
-    i Did you misspell an argument name?
+    Code
+      as.gtable(g2, heights = unit(c(1, 1), "cm"))
+    Condition
+      Warning:
+      `heights` truncated to length 1.
+    Output
+      TableGrob (1 x 1) "layout": 1 grobs
+        z     cells   name                  grob
+      1 1 (1-1,1-1) layout circle[GRID.circle.9]
+
+---
+
+    Code
+      as.gtable(1:5)
+    Condition
+      Error in `as.gtable()`:
+      ! Can't convert an integer vector to a <gtable>.
+
+---
+
+    Code
+      as.gtable(g1, foo = "bar")
+    Condition
+      Error in `as.gtable()`:
+      ! Arguments in `...` must be used.
+      x Problematic argument:
+      * foo = "bar"
+      i Did you misspell an argument name?
 

tests/testthat/_snaps/layout.md

@@ -0,0 +1,24 @@
+# Adding multiple grobs
+
+    Code
+      gtable_add_grob(layout, grobs, c(1:3), 1, 3, 3)
+    Condition
+      Error in `gtable_add_grob()`:
+      ! Not all inputs have either length 1 or same length same as `grobs`
+
+---
+
+    Code
+      gtable_add_grob(layout, grobs, tval, 1:2, 3, 3)
+    Condition
+      Error in `gtable_add_grob()`:
+      ! Not all inputs have either length 1 or same length same as `grobs`
+
+---
+
+    Code
+      gtable_add_grob(layout, grobs, tval, 1, 3, 3, z = 1:4)
+    Condition
+      Error in `gtable_add_grob()`:
+      ! Not all inputs have either length 1 or same length same as `grobs`
+

tests/testthat/_snaps/subsetting.md

@@ -0,0 +1,32 @@
+# indexing errors are caught
+
+    Code
+      base[2:1, ]
+    Condition
+      Error in `base[2:1, ]`:
+      ! `i` and `j` must be increasing sequences of numbers
+
+---
+
+    Code
+      base[c(2, 2), ]
+    Condition
+      Error in `base[c(2, 2), ]`:
+      ! `i` and `j` must be increasing sequences of numbers
+
+---
+
+    Code
+      base[, 2:1]
+    Condition
+      Error in `base[, 2:1]`:
+      ! `i` and `j` must be increasing sequences of numbers
+
+---
+
+    Code
+      base[, c(1, 1)]
+    Condition
+      Error in `base[, c(1, 1)]`:
+      ! `i` and `j` must be increasing sequences of numbers
+

tests/testthat/test-gtable.R

@@ -11,14 +11,9 @@ test_that("as.gtable sensibly converts objects", {
   expect_equal(as.numeric(convertUnit(gtable_width(test), "cm")), 2)
   expect_equal(as.numeric(convertUnit(gtable_height(test), "cm")), 2)
 
-  expect_warning(
-    as.gtable(g2, widths = unit(c(1, 1), "cm")),
-    "truncated to length 1"
-  )
-  expect_warning(
-    as.gtable(g2, heights = unit(c(1, 1), "cm")),
-    "truncated to length 1"
-  )
-  expect_snapshot_error(as.gtable(1:5))
-  expect_snapshot_error(as.gtable(g1, foo = "bar"))
+  expect_snapshot(as.gtable(g2, widths = unit(c(1, 1), "cm")))
+  expect_snapshot(as.gtable(g2, heights = unit(c(1, 1), "cm")))
+
+  expect_snapshot(as.gtable(1:5), error = TRUE)
+  expect_snapshot(as.gtable(g1, foo = "bar"), error = TRUE)
 })

tests/testthat/test-layout.R

@@ -150,7 +150,7 @@ test_that("Adding multiple grobs", {
 
   # Error if inputs are not length 1 or same length as grobs
   layout <- gtable_add_cols(gtable_add_rows(gtable(), rep(cm, 3)), rep(cm, 3))
-  expect_error(gtable_add_grob(layout, grobs, c(1:3), 1, 3, 3))
-  expect_error(gtable_add_grob(layout, grobs, tval, 1:2, 3, 3))
-  expect_error(gtable_add_grob(layout, grobs, tval, 1, 3, 3, z = 1:4))
+  expect_snapshot(gtable_add_grob(layout, grobs, c(1:3), 1, 3, 3), error = TRUE)
+  expect_snapshot(gtable_add_grob(layout, grobs, tval, 1:2, 3, 3), error = TRUE)
+  expect_snapshot(gtable_add_grob(layout, grobs, tval, 1, 3, 3, z = 1:4), error = TRUE)
 })

tests/testthat/test-subsetting.R

@@ -43,10 +43,10 @@ test_that("spanning grobs kept if ends kept", {
 })
 
 test_that("indexing errors are caught", {
-  expect_error(base[2:1,])
-  expect_error(base[c(2,2), ])
-  expect_error(base[, 2:1])
-  expect_error(base[, c(1,1)])
+  expect_snapshot(base[2:1,], error = TRUE)
+  expect_snapshot(base[c(2,2), ], error = TRUE)
+  expect_snapshot(base[, 2:1], error = TRUE)
+  expect_snapshot(base[, c(1,1)], error = TRUE)
 
   expect_silent(base[1:2, 1:2])
 })