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Merge pull request #16 from reactome/develop
added utils functions
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‎docs/analysis.html‎

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<html xmlns="http://www.w3.org/1999/xhtml">
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<meta charset="utf-8" />
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<title>Analysis Service &#8212; reactome2py 0.0.5 documentation</title>
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<title>Analysis Service &#8212; reactome2py 0.0.6 documentation</title>
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<link rel="stylesheet" href="static/alabaster.css" type="text/css" />
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<script type="text/javascript" id="documentation_options" data-url_root="./" src="static/documentation_options.js"></script>

‎docs/build/html/.buildinfo‎

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# Sphinx build info version 1
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# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
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config: a20ea4cccd35d3ba23f0ea31c4bd4f3c
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config: cffc6d506f7a64f01b2d03cc6062eb52
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tags: 645f666f9bcd5a90fca523b33c5a78b7

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var DOCUMENTATION_OPTIONS = {
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URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
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VERSION: '0.0.5',
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VERSION: '0.0.6',
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‎docs/build/html/analysis.html‎

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<html xmlns="http://www.w3.org/1999/xhtml">
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<title>Analysis Service &#8212; reactome2py 0.0.6 documentation</title>
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<link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
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<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>

‎docs/build/html/content.html‎

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<html xmlns="http://www.w3.org/1999/xhtml">
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<title>Content Service &#8212; reactome2py 0.0.5 documentation</title>
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<title>Content Service &#8212; reactome2py 0.0.6 documentation</title>
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<link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
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‎docs/build/html/genindex.html‎

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<html xmlns="http://www.w3.org/1999/xhtml">
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<title>Index &#8212; reactome2py 0.0.5 documentation</title>
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<title>Index &#8212; reactome2py 0.0.6 documentation</title>
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</li>
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<li><a href="analysis.html#reactome2py.analysis.db_version">db_version() (in module reactome2py.analysis)</a>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="content.html#reactome2py.content.discover">discover() (in module reactome2py.content)</a>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="content.html#reactome2py.content.disease">disease() (in module reactome2py.content)</a>
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</li>
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<li><a href="utils.html#reactome2py.utils.drug_data_source">drug_data_source() (in module reactome2py.utils)</a>
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<li><a href="utils.html#reactome2py.utils.drug_targets">drug_targets() (in module reactome2py.utils)</a>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="utils.html#reactome2py.utils.gene_mappings">gene_mappings() (in module reactome2py.utils)</a>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="utils.html#reactome2py.utils.genelist_drug_target">genelist_drug_target() (in module reactome2py.utils)</a>
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<li><a href="utils.html#reactome2py.utils.genelist_fi">genelist_fi() (in module reactome2py.utils)</a>
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<li><a href="content.html#reactome2py.content.participants_reference_entities">participants_reference_entities() (in module reactome2py.content)</a>
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<li><a href="analysis.html#reactome2py.analysis.pathway2df">pathway2df() (in module reactome2py.analysis)</a>
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<li><a href="utils.html#reactome2py.utils.pathway_boolean_network">pathway_boolean_network() (in module reactome2py.utils)</a>
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<li><a href="content.html#reactome2py.content.pathway_contained_event">pathway_contained_event() (in module reactome2py.content)</a>
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<li><a href="content.html#reactome2py.content.pathway_contained_event_atttibute">pathway_contained_event_atttibute() (in module reactome2py.content)</a>
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<li><a href="utils.html#reactome2py.utils.pathway_drug_target">pathway_drug_target() (in module reactome2py.utils)</a>
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<li><a href="content.html#reactome2py.content.pathway_contained_event_atttibute">pathway_contained_event_atttibute() (in module reactome2py.content)</a>
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<li><a href="utils.html#reactome2py.utils.pathway_factor_graph">pathway_factor_graph() (in module reactome2py.utils)</a>
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<li><a href="utils.html#reactome2py.utils.pathway_fi">pathway_fi() (in module reactome2py.utils)</a>
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<li><a href="utils.html#reactome2py.utils.pathway_pe_drug_target">pathway_pe_drug_target() (in module reactome2py.utils)</a>
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<li><a href="content.html#reactome2py.content.pathways_low_diagram">pathways_low_diagram() (in module reactome2py.content)</a>
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‎docs/build/html/index.html‎

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<meta charset="utf-8" />
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<title>reactome2py Docs &#8212; reactome2py 0.0.6 documentation</title>
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<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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<script type="text/javascript" src="_static/doctools.js"></script>
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<script type="text/javascript" src="_static/language_data.js"></script>
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<link rel="index" title="Index" href="genindex.html" />
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<link rel="search" title="Search" href="search.html" />
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<link rel="next" title="Analysis Service" href="analysis.html" />
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<div class="section" id="reactome2py-docs">
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<h1>reactome2py Docs<a class="headerlink" href="#reactome2py-docs" title="Permalink to this headline"></a></h1>
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<p>The reactome2py package is a library of helper functions that wrap calls to the reactome’s http API endpoints. It also supplies a utility module that simplifies access to reactome open-data.</p>
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<p>The reactome2py package is meant to facilitate communication between reactome tools and services with python.</p>
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<p>If you are getting started with <cite>reactome</cite>, visit our user’s guide page documentation site at <a class="reference external" href="https://reactome.org/userguide">https://reactome.org/userguide</a></p>
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<p>For more information on API services or data downloads, visit:</p>
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<ul class="simple">
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<li><p><a class="reference external" href="https://reactome.org/dev">https://reactome.org/dev</a></p></li>
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<li><p><a class="reference external" href="https://reactome.org/download-data">https://reactome.org/download-data</a></p></li>
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</ul>
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<div class="toctree-wrapper compound">
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<p class="caption"><span class="caption-text">Contents:</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="analysis.html">Analysis Service</a></li>
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<li class="toctree-l1"><a class="reference internal" href="content.html">Content Service</a></li>
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<li class="toctree-l1"><a class="reference internal" href="utils.html">Utils</a></li>
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<div class="section" id="indices-and-tables">
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<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline"></a></h2>
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<ul class="simple">
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<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
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<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
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<li><p><a class="reference internal" href="search.html"><span class="std std-ref">Search Page</span></a></p></li>
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<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
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<h1 class="logo"><a href="#">reactome2py</a></h1>
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<h3>Navigation</h3>
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<p class="caption"><span class="caption-text">Contents:</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="analysis.html">Analysis Service</a></li>
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<li class="toctree-l1"><a class="reference internal" href="content.html">Content Service</a></li>
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<li class="toctree-l1"><a class="reference internal" href="utils.html">Utils</a></li>
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<div class="relations">
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<h3>Related Topics</h3>
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<ul>
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<li><a href="#">Documentation overview</a><ul>
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<li>Next: <a href="analysis.html" title="next chapter">Analysis Service</a></li>
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</ul>
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&copy;2019, Nasim Sanati.
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Powered by <a href="http://sphinx-doc.org/">Sphinx 2.2.1</a>
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&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
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‎docs/build/html/py-modindex.html‎

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