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  1. uclahs-cds/prostate-cancer-m6a-paper uclahs-cds/prostate-cancer-m6a-paper Public

    Code for "The Landscape of N6-Methyladenosine in Localized Primary Prostate Cancer"

    R 5 2

  2. Gene-Omics-Integrator Gene-Omics-Integrator Public

    R utilities for multimodal statistics in cancer genomics—focused on mutual information between heterogeneous data types (e.g., expression, copy‑number, splicing) with plotting helpers. This code wa…

    R

  3. sqtl-nextflow sqtl-nextflow Public

    A light-weight Nextflow wrapper to demonstrate splice QTL (sQTL) analysis using **QTLtools**. It includes optional genotype preprocessing with **PLINK** and BCF/CSI generation, followed by QTLtools…

    Nextflow

  4. uclahs-cds/pipeline-align-DNA uclahs-cds/pipeline-align-DNA Public

    Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment

    Nextflow 4 2

  5. uclahs-cds/package-BoutrosLab-plotting-general uclahs-cds/package-BoutrosLab-plotting-general Public

    Functions to Create Publication-Quality Plots

    R 16 4