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bioinformatics-utils

Repository to share useful scripts for bioinformatics and SPLASH post-processing

Utilities

anchors_from_fasta.py

This script can be used to generate a set of anchors from a fasta file (or a single record in a fasta file).

convert_satc_format.py

This script can be used to convert a plain text 3-column (count,anchor and target, sample) SATC file into a 4 column SATC file (sample, anchor, target, count) Must provide the original anchor length used when running SPLASH (default: 27)

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Repository to share useful scripts for bioinformatics and SPLASH post-processing

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