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cram: Clarify the preservation map's reference required flag for unmapped slices

cram

Status: Open.

#809 In samtools/hts-specs;

· zaeleus opened on Feb 4, 2025

Consider 64-bit values in BCF, BAM and CRAM

cram

sam

vcf

Status: Open.

#735 In samtools/hts-specs;

· jkbonfield opened on Jul 18, 2023

Cramv4

cram

Status: Open (in progress).

samtools/hts-specsnumber 502

#502 In samtools/hts-specs;

· jkbonfield opened on May 28, 2020

CRAM v4 and culling encoding methods

cram

Status: Open.

#478 In samtools/hts-specs;

· jkbonfield opened on Mar 4, 2020

How to cite specs

bed

cram

htsget

sam

vcf

Status: Open.

#179 In samtools/hts-specs;

· magicDGS opened on Nov 30, 2016

CRAI: incompatible with BAI metadata

cram

enhancement

Status: Open.

#146 In samtools/hts-specs;

· vadimzalunin opened on Apr 15, 2016

CRAM v4 idea tracker

cram

Status: Open.

#144 In samtools/hts-specs;

· jkbonfield opened on Apr 12, 2016

.crai index improvements

cram

Status: Open.

#137 In samtools/hts-specs;

· jkbonfield opened on Mar 15, 2016

cram and bam footers for storing key/value pairs

cram

enhancement

sam

Status: Open.

#136 In samtools/hts-specs;

· sb10 opened on Mar 14, 2016