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Pull requests list

Vcf/gvcf example fix
#853 opened Feb 24, 2026 by d-cameron Loading…
1
1
Clarify GQ vcf
#852 opened Feb 24, 2026 by d-cameron Loading…
1
1
Clarified INFO END deprecation status vcf
#844 opened Sep 9, 2025 by d-cameron Loading…
5
Minor CRAM notation suggestion: Use IEC-style MiB notation for powers of two, rather than MB cram
#841 opened Aug 12, 2025 by jmarshall Loading…
2
Add succinct description of refget sequence collection in metadata vcf
#832 opened Jun 18, 2025 by tcezard • Draft
2
Remove refget from hts-specs refget
#830 opened Jun 2, 2025 by andrewyatz Loading…
feat: add proof of concept solution for #814 sam sam-tags
#815 opened Feb 17, 2025 by yfarjoun • Draft
feat: add tags related to optical duplicates. sam sam-tags
#813 opened Feb 16, 2025 by yfarjoun Loading…
7
Add encryptionScheme parameter to htsget htsget
#808 opened Feb 3, 2025 by brainstorm Loading…
14
Copy the tag type text from SAM spec to SAMtags (PR #804) sam sam-tags
#804 opened Jan 7, 2025 by jkbonfield Loading…
1
5
Explicitly permit eg N+m in MM tag (PR#799) sam sam-tags
#799 opened Oct 28, 2024 by jkbonfield Loading…
1
4
fix discrepancy of empty bed files bed
#775 opened Jun 28, 2024 by kloetzl Loading…
5
Add SAM recommendation of MAPQ=0 for unmapped reads sam
#753 opened Jan 29, 2024 by jkbonfield Loading…
1
@jmarshall
6
Adding AEAD support as new encryption method crypt4gh
#736 opened Jul 22, 2023 by silverdaz Loading…
5
Allow for UTF-8 field values in header regular expression sam
#726 opened May 12, 2023 by jmarshall Loading…
1
11
Fix typos (refget) refget
#700 opened Feb 2, 2023 by jkbonfield Loading…
Remove "top strand" phrase from MM tag description. sam sam-tags
#668 opened Aug 31, 2022 by jkbonfield Loading…
1
@jmarshall
1
Define optional HTTP 426 response for requests for index files htsget
#665 opened Aug 3, 2022 by jmarshall Loading…
Clarify MI for identifying source molecule strand sam sam-tags
#633 opened Mar 2, 2022 by nh13 Loading…
@jmarshall
15
Clarification of empty vector representation vcf
#617 opened Dec 16, 2021 by pd3 Loading…
@d-cameron
3
Phred scale clarifications sam vcf
#579 opened Jun 16, 2021 by jkbonfield Loading…
1
19
strawman attempt at adding array of booleans vcf
#537 opened Dec 17, 2020 by yfarjoun Loading…
2 tasks
2
document convention for "QC squeezing" in population VCF vcf
#527 opened Sep 7, 2020 by mlin Loading…
1
Cramv4 cram
#502 opened May 28, 2020 by jkbonfield Loading…
2
htsget: add samples query parameter, principally to select subset of VCF columns htsget
#430 opened Jul 10, 2019 by mlin Loading…
5
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