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Add check for 0 dimensions when converting to Seurat#393

Merged
rcannood merged 2 commits intodevelfrom
bug/issue-357/empty-seurat
Jan 26, 2026
Merged

Add check for 0 dimensions when converting to Seurat#393
rcannood merged 2 commits intodevelfrom
bug/issue-357/empty-seurat

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@lazappi
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@lazappi lazappi commented Dec 4, 2025

Related to: Fixes #357

Description

This doesn't seem to be supported by Seurat so added a check with a nicer error message.

Checklist

Before review

  • Update and regenerate man pages
  • Add/update tests
  • Add/update examples in vignettes
  • Pass CI checks

Before merge

  • Update NEWS
  • Bump devel version

@lazappi lazappi requested review from LouiseDck and rcannood December 4, 2025 12:55
@lazappi lazappi marked this pull request as ready for review December 4, 2025 12:55
@rcannood rcannood merged commit c071098 into devel Jan 26, 2026
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@rcannood rcannood deleted the bug/issue-357/empty-seurat branch January 26, 2026 15:12
lazappi added a commit that referenced this pull request Feb 24, 2026
…n-sce-convert

* origin/devel:
  Fix CI (#418)
  Update CI (#416)
  Separate reading/writing keys in `HDF5AnnData` (#392)
  Cherry-pick Bioc3.22 updates into devel (#411)
  Add check for 0 dimensions when converting to `Seurat` (#393)
  Force loading the environment in Python vignette (#394)
  Add issue templates (#395)
  Warn that matrix dim names won't be written to H5AD (#396)
  warn when rotation is provided, but not in LEM (#407)
  Set different cache versions in GHA (#403)
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Conversion to Seurat fails when a dimension is 0

3 participants