Merge pull request #9 from scverse/source_curator_cellline

Fix source
scverse · Nov 13, 2024 · 1d91e24 · 1d91e24
2 parents 9b3ea3a + efab1ef
commit 1d91e24
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diff --git a/pertpy_datasets/perturbation_curator.py b/pertpy_datasets/perturbation_curator.py
@@ -69,9 +69,9 @@ def __init__(
                 }
 
                 PT_SOURCES: dict[str, Record] = {
-                    "depmap_id": bt.Source.filter(name="depmap").one(),
-                    "cell_line": bt.Source.filter(name="depmap").one(),
-                    # "compound_treatments": bt.Source.filter(entity="Drug", name="chebi").first()
+                    "depmap_id": bt.Source.using(using_key).filter(name="depmap").one(),
+                    "cell_line": bt.Source.using(using_key).filter(name="depmap").one(),
+                    # "compound_treatments": bt.Source..using(using_key)filter(entity="Drug", name="chebi").first()
                 }
 
                 self.organism = organism