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Issues: scverse/scirpy

scverse datastructure for AIRR data
#327 by grst was closed Apr 7, 2023
Closed 57
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40 Open 271 Closed
40 Open 271 Closed
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Issues list

Scirpy tutorial incorrect - working with multimodal data bug Something isn't working
#616 opened May 23, 2025 by benemead
Add TRAIT DB as dataset/How to generate an AIRR object from it?
#611 opened Apr 10, 2025 by dansteiert
3
Title: GPL Dependencies as Hard Dependencies
#603 opened Mar 12, 2025 by Intron7
Option to use TCRblosum for distance calculation
#591 opened Feb 10, 2025 by riederd
2
How to properly select metrics&cutoffparameter
#586 opened Jan 23, 2025 by MaybeTommorow
1
Add support for spot-based spatial data and bulk data
#583 opened Dec 16, 2024 by grst
How to Add sequence_id Information to mudata['airr'].obsm['airr'] When Reading 10X VDJ Results
#581 opened Dec 13, 2024 by erlun1
1
Dealing with alleles and multiple gene calls
#561 opened Oct 8, 2024 by grst
@felixpetschko
6
Refactor distance metric histogram breaking-change
#548 opened Aug 30, 2024 by grst
@felixpetschko
Community tutorial page
#495 opened Feb 28, 2024 by grst
Add the Morisita-Horn index for repertoire overlap similarity scores
#488 opened Jan 29, 2024 by NicolasSompairac
1
IEDB database cdr3_aa stored as junction_aa bug Something isn't working
#469 opened Dec 14, 2023 by racng
1
10
ir.tl.chain_qc doesn't mark cells with no IR bug Something isn't working
#452 opened Sep 18, 2023 by a-munoz-rojas
1
@grst
2
Can't save h5mu from Scirpy processed gex+bcr+tcr data if I copy airr into obs bug Something isn't working
#434 opened Jul 19, 2023 by Ngort
3
Plot preview doesn't show in API docs documentation Improvements or additions to documentation
#429 opened Jul 5, 2023 by grst
1
1
In ir.pl.repertoire_overlap() function the fraction param is not working bug Something isn't working
#424 opened Jul 3, 2023 by llumdi
4
Hackathon: add generic_ir_from_biocypher() function to ingest TCR data
#404 opened Apr 28, 2023 by slobentanzer
3
Refactor _get_color function to stop using private scanpy functions and to work with mudata
#388 opened Mar 29, 2023 by grst
Split IO into separate package
#385 opened Mar 16, 2023 by grst
2
clean up usage of _is_na, _is_true and _is_false
#380 opened Jan 29, 2023 by grst
antigen specificity prediction
#371 opened Oct 18, 2022 by grst
1
Autoencoder-based sequence embedding
#369 opened Oct 9, 2022 by grst
10
Speed up read_airr
#367 opened Oct 9, 2022 by grst
spatial airr data
#354 opened Jul 6, 2022 by grst
6
Why clonotype_imbalance is deprecated?
#330 opened Mar 30, 2022 by naity2
5
ProTip! Updated in the last three days: updated:>2025-06-14.