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@seqcode

seqcode

Collection of projects related to DNA sequencing data processing & regulatory genomics analyses

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  1. miniMDS miniMDS Public

    Python 29 9

  2. allo allo Public

    Allo: a multi-mapped read rescue strategy for gene regulatory analyses

    Python 24 3

  3. cross-species-domain-adaptation cross-species-domain-adaptation Public

    Codebase for the domain adaptation (cross-species TF binding prediction) project.

    Jupyter Notebook 12 6

  4. Bichrom Bichrom Public

    Interpretable bimodal network for transcription factors binding site prediction

    Python 9 3

  5. sequnwinder sequnwinder Public

    SeqUnwinder: a platform for deconvolving motifs associated with genomic labels

    Java 7

  6. chexmix chexmix Public

    ChExMix: the ChIP-exo mixture model

    Java 7

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